Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11717111	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11717395	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11921695	0.83[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap]
rs1350867	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1461822	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1461823	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17021644	0.83[EUR][1000 genomes]
rs17021677	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17021763	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17021787	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17021793	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2371341	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34754155	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4298010	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4311180	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4482629	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57372256	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62244460	0.82[ASN][1000 genomes]
rs724188	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050672	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73052505	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7426401	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs922288	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9310869	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9855864	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1001920	chr3:28711075-28788920	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3461677	chr3:28734924-28744248	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3461678	chr3:28734963-28744223	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3461679	chr3:28734990-28744180	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3461680	chr3:28734990-28744180	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28727200-28739600	Weak transcription	HSMMtube	muscle
2	chr3:28736200-28737600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:28737400-28737600	Enhancers	Gastric	stomach

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