Variant report

Variant	rs34754696
Chromosome Location	chr15:53490141-53490142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17545973	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628504	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs538505	0.81[EUR][1000 genomes]
rs690050	0.81[EUR][1000 genomes]
rs7168646	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72733292	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735316	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72735318	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53489000-53496000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:53489800-53490200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:53490000-53490200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:53490000-53490200	Enhancers	Brain Hippocampus Middle	brain
5	chr15:53490000-53490400	Enhancers	Liver	Liver
6	chr15:53490000-53490400	Enhancers	HepG2	liver
7	chr15:53490000-53492000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:53490000-53493800	Weak transcription	Thymus	Thymus
9	chr15:53490000-53494800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:53490000-53495200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:53490000-53495400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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