Variant report

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17545973	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628504	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34754696	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs538505	0.81[EUR][1000 genomes]
rs690050	0.82[EUR][1000 genomes]
rs7168646	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72735316	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72735318	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1051634	chr15:53459129-53565627	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3385784	chr15:53492461-53521900	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53489000-53496000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:53490000-53495200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:53490000-53495400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:53490400-53495600	Weak transcription	Liver	Liver
5	chr15:53490400-53495800	Weak transcription	HepG2	liver
6	chr15:53493200-53497200	Enhancers	Dnd41	blood
7	chr15:53493400-53496800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:53493400-53497000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:53493800-53496600	Enhancers	Fetal Thymus	thymus
10	chr15:53493800-53496600	Enhancers	Thymus	Thymus
11	chr15:53493800-53497400	Enhancers	Primary hematopoietic stem cells	blood
12	chr15:53494000-53495200	Weak transcription	Pancreas	Pancrea
13	chr15:53494800-53495600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:53495000-53495200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:53495000-53495400	Enhancers	Fetal Muscle Leg	muscle
16	chr15:53495000-53496400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr15:53495000-53496400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr15:53495000-53496400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr15:53495000-53496400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:53495000-53498800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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