Variant report

Variant	rs34763880
Chromosome Location	chr16:69806773-69806774
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr16:69806417-69806810	GM12878	blood:	n/a	n/a
2	RUNX3	chr16:69806355-69806954	GM12878	blood:	n/a	n/a
3	ZNF263	chr16:69806578-69807089	HEK293-T-REx	kidney:	n/a	chr16:69806691-69806712
4	CEBPB	chr16:69806731-69806884	IMR90	lung:	n/a	n/a
5	EBF1	chr16:69806385-69806804	GM12878	blood:	n/a	n/a
6	EBF1	chr16:69806396-69806825	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:69801326..69804144-chr16:69805460..69809751,5	K562	blood:
2	chr16:69787397..69789897-chr16:69805438..69807476,2	MCF-7	breast:
3	chr16:69801430..69804144-chr16:69805898..69809751,3	K562	blood:
4	chr16:69795131..69797441-chr16:69806211..69807716,2	MCF-7	breast:
5	chr16:69804983..69807753-chr16:69808431..69810335,2	K562	blood:

Variant related genes	Relation type
WWP2	TF binding region
ENSG00000141101	Chromatin interaction
ENSG00000198373	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13336410	1.00[EUR][1000 genomes]
rs16959189	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16959196	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6499256	1.00[EUR][1000 genomes]
rs74029466	1.00[EUR][1000 genomes]
rs8062334	1.00[EUR][1000 genomes]
rs8062596	1.00[EUR][1000 genomes]
rs8063027	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69797200-69807000	Weak transcription	Esophagus	oesophagus
2	chr16:69797200-69807000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr16:69797200-69809800	Weak transcription	Small Intestine	intestine
4	chr16:69797400-69821200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr16:69797600-69808200	Weak transcription	Primary T cells from cord blood	blood
6	chr16:69797600-69816800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:69797600-69853400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr16:69797800-69806800	Weak transcription	NH-A	brain
9	chr16:69797800-69809200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr16:69797800-69809200	Weak transcription	A549	lung
11	chr16:69797800-69809800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr16:69797800-69821200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr16:69798000-69809200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr16:69798000-69809400	Weak transcription	Dnd41	blood
15	chr16:69798000-69810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr16:69800600-69806800	Weak transcription	Fetal Muscle Leg	muscle
17	chr16:69800600-69817200	Weak transcription	Fetal Stomach	stomach
18	chr16:69800600-69817600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr16:69802200-69809200	Weak transcription	Fetal Intestine Large	intestine
20	chr16:69802800-69808200	Weak transcription	Fetal Intestine Small	intestine
21	chr16:69802800-69821400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr16:69803000-69823400	Weak transcription	Right Ventricle	heart
23	chr16:69803400-69830200	Weak transcription	Fetal Heart	heart
24	chr16:69804200-69807800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr16:69804400-69808600	Enhancers	Primary B cells from peripheral blood	blood
26	chr16:69804600-69807200	Enhancers	HepG2	liver
27	chr16:69804600-69807600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr16:69804800-69814400	Weak transcription	Lung	lung
29	chr16:69805200-69807800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr16:69805400-69806800	Enhancers	Liver	Liver
31	chr16:69805400-69806800	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr16:69805400-69807000	Enhancers	Stomach Mucosa	stomach
33	chr16:69805600-69807000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr16:69805600-69807000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr16:69805600-69807200	Enhancers	Pancreas	Pancrea
36	chr16:69805600-69807600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr16:69806000-69806800	Enhancers	Gastric	stomach
38	chr16:69806000-69807000	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr16:69806000-69807000	Enhancers	Spleen	Spleen
40	chr16:69806200-69806800	Enhancers	Primary T cells fromperipheralblood	blood
41	chr16:69806200-69806800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr16:69806200-69806800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr16:69806200-69807000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr16:69806200-69807000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr16:69806200-69807000	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr16:69806200-69807000	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr16:69806200-69807200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr16:69806200-69807200	Enhancers	Left Ventricle	heart
49	chr16:69806200-69807200	Enhancers	Hela-S3	cervix
50	chr16:69806200-69807200	Enhancers	NHLF	lung

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