Variant report

Variant	rs8063027
Chromosome Location	chr16:69833339-69833340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69833036..69834030-chr16:69971100..69971839,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13336410	1.00[EUR][1000 genomes]
rs16959189	1.00[EUR][1000 genomes]
rs16959196	1.00[EUR][1000 genomes]
rs34763880	1.00[EUR][1000 genomes]
rs6499256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7195995	1.00[ASW][hapmap];0.96[AFR][1000 genomes]
rs74029466	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8062334	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062596	0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69797600-69853400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:69807200-69852400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:69807200-69852800	Weak transcription	Hela-S3	cervix
4	chr16:69807200-69854800	Weak transcription	Psoas Muscle	Psoas
5	chr16:69810000-69839800	Weak transcription	HUVEC	blood vessel
6	chr16:69810200-69833400	Weak transcription	Dnd41	blood
7	chr16:69815200-69833400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:69817800-69854600	Weak transcription	HMEC	breast
9	chr16:69820200-69845000	Weak transcription	K562	blood
10	chr16:69822400-69854800	Weak transcription	Stomach Mucosa	stomach
11	chr16:69823800-69874800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr16:69824200-69852400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr16:69827000-69833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr16:69830000-69839000	Strong transcription	HepG2	liver
15	chr16:69830200-69856600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr16:69830600-69833800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr16:69830600-69838400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr16:69830600-69857600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr16:69830600-69864200	Weak transcription	Colon Smooth Muscle	Colon
20	chr16:69830600-69867000	Weak transcription	Right Ventricle	heart
21	chr16:69831000-69845000	Weak transcription	Fetal Brain Male	brain
22	chr16:69831000-69845600	Weak transcription	A549	lung
23	chr16:69831000-69852400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr16:69831000-69852400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr16:69831000-69854800	Weak transcription	Aorta	Aorta
26	chr16:69831000-69856400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr16:69831200-69846200	Strong transcription	Fetal Intestine Small	intestine
28	chr16:69831600-69838800	Strong transcription	Duodenum Mucosa	Duodenum
29	chr16:69832000-69834200	Strong transcription	Primary B cells from cord blood	blood
30	chr16:69832000-69834400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
31	chr16:69832000-69834800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr16:69832000-69836800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr16:69832000-69837800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr16:69832000-69838800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr16:69832400-69833800	Enhancers	Osteobl	bone
36	chr16:69832400-69834000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr16:69832400-69834200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr16:69832400-69834200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr16:69832400-69835200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr16:69832400-69835600	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr16:69832400-69837000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr16:69832400-69858400	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr16:69832600-69833400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr16:69832600-69833400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr16:69832600-69833400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr16:69832600-69833600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr16:69832600-69833600	Active TSS	Brain Hippocampus Middle	brain
48	chr16:69832600-69833800	Strong transcription	Esophagus	oesophagus
49	chr16:69832600-69833800	Strong transcription	Fetal Thymus	thymus
50	chr16:69832600-69833800	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach

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