Variant report

Variant	rs8062334
Chromosome Location	chr16:69832970-69832971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13336410	1.00[EUR][1000 genomes]
rs16959189	1.00[EUR][1000 genomes]
rs16959196	1.00[EUR][1000 genomes]
rs34763880	1.00[EUR][1000 genomes]
rs6499256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7195995	0.88[AFR][1000 genomes]
rs74029466	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8062596	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8063027	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69797600-69853400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:69806800-69833000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:69807200-69852400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:69807200-69852800	Weak transcription	Hela-S3	cervix
5	chr16:69807200-69854800	Weak transcription	Psoas Muscle	Psoas
6	chr16:69808000-69833200	Weak transcription	HSMM	muscle
7	chr16:69810000-69839800	Weak transcription	HUVEC	blood vessel
8	chr16:69810200-69833400	Weak transcription	Dnd41	blood
9	chr16:69815200-69833400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr16:69817800-69854600	Weak transcription	HMEC	breast
11	chr16:69820200-69845000	Weak transcription	K562	blood
12	chr16:69822200-69833000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr16:69822400-69833000	Weak transcription	HSMMtube	muscle
14	chr16:69822400-69854800	Weak transcription	Stomach Mucosa	stomach
15	chr16:69822600-69833000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr16:69822600-69833200	Weak transcription	Small Intestine	intestine
17	chr16:69823800-69874800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr16:69824000-69833000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr16:69824000-69833000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr16:69824000-69833200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr16:69824200-69833000	Weak transcription	Spleen	Spleen
22	chr16:69824200-69852400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr16:69824400-69833000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr16:69827000-69833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr16:69827600-69833000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr16:69830000-69839000	Strong transcription	HepG2	liver
27	chr16:69830200-69856600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr16:69830600-69833000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr16:69830600-69833000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr16:69830600-69833000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr16:69830600-69833200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr16:69830600-69833200	Weak transcription	Brain Germinal Matrix	brain
33	chr16:69830600-69833200	Weak transcription	Fetal Lung	lung
34	chr16:69830600-69833200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr16:69830600-69833800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr16:69830600-69838400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr16:69830600-69857600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr16:69830600-69864200	Weak transcription	Colon Smooth Muscle	Colon
39	chr16:69830600-69867000	Weak transcription	Right Ventricle	heart
40	chr16:69830800-69833000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr16:69830800-69833200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr16:69830800-69833200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr16:69831000-69833200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr16:69831000-69845000	Weak transcription	Fetal Brain Male	brain
45	chr16:69831000-69845600	Weak transcription	A549	lung
46	chr16:69831000-69852400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr16:69831000-69852400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr16:69831000-69854800	Weak transcription	Aorta	Aorta
49	chr16:69831000-69856400	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr16:69831200-69833000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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