Variant report

Variant	rs34768970
Chromosome Location	chr7:8147978-8147979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10272483	1.00[ASN][1000 genomes]
rs12538224	1.00[ASN][1000 genomes]
rs13231445	1.00[ASN][1000 genomes]
rs34001876	1.00[ASN][1000 genomes]
rs37943	1.00[ASN][1000 genomes]
rs37946	1.00[ASN][1000 genomes]
rs37953	1.00[ASN][1000 genomes]
rs6947392	1.00[ASN][1000 genomes]
rs6951010	1.00[ASN][1000 genomes]
rs6976735	1.00[ASN][1000 genomes]
rs7806407	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1020686	chr7:8095118-8311985	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv538723	chr7:8095118-8311985	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8096000-8151600	Weak transcription	Spleen	Spleen
2	chr7:8136800-8151800	Weak transcription	Fetal Stomach	stomach
3	chr7:8145600-8149400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:8145600-8152000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:8145800-8148800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:8145800-8153000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:8146000-8149000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:8146000-8151600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:8146400-8152000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:8146400-8152800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:8146400-8153200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr7:8146400-8153600	Weak transcription	Primary T cells from cord blood	blood
13	chr7:8146600-8152000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr7:8147600-8149200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:8147600-8150600	Enhancers	Adipose Nuclei	Adipose
16	chr7:8147800-8158400	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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