Variant report

Variant	rs37943
Chromosome Location	chr7:7985185-7985186
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:7982231..7984516-chr7:7984634..7987020,2	MCF-7	breast:
2	chr7:7969976..7971625-chr7:7983223..7985791,2	MCF-7	breast:
3	chr7:7985182..7986874-chr7:7992150..7994347,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10272483	1.00[ASN][1000 genomes]
rs12538224	1.00[ASN][1000 genomes]
rs13231445	1.00[ASN][1000 genomes]
rs2041567	1.00[ASN][1000 genomes]
rs34768970	1.00[ASN][1000 genomes]
rs37946	1.00[ASN][1000 genomes]
rs37953	1.00[ASN][1000 genomes]
rs6947392	1.00[ASN][1000 genomes]
rs6951010	1.00[ASN][1000 genomes]
rs6976735	1.00[ASN][1000 genomes]
rs718549	1.00[ASN][1000 genomes]
rs73359459	1.00[ASN][1000 genomes]
rs73359463	1.00[ASN][1000 genomes]
rs7779286	1.00[ASN][1000 genomes]
rs7806407	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1020161	chr7:7929384-8047553	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv525502	chr7:7938596-7996590	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv606048	chr7:7938596-7996590	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7976000-7986200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:7976800-7986200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:7982800-7985800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:7983400-7985400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:7983800-7985800	Flanking Active TSS	Dnd41	blood
6	chr7:7984200-7985200	Flanking Active TSS	Fetal Thymus	thymus
7	chr7:7984200-7985400	Enhancers	Psoas Muscle	Psoas
8	chr7:7984200-7985800	Enhancers	Fetal Muscle Leg	muscle
9	chr7:7984200-7987200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:7984400-7985800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:7984400-7985800	Weak transcription	Aorta	Aorta
12	chr7:7984400-7986000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:7984400-7995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:7984400-7996200	Weak transcription	Left Ventricle	heart
15	chr7:7984600-7985200	Enhancers	Primary T cells from cord blood	blood
16	chr7:7984600-7985400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:7984600-7985400	Enhancers	Brain Germinal Matrix	brain
18	chr7:7984600-7985400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr7:7984600-7986200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:7984800-7985400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr7:7984800-7985600	Enhancers	Primary B cells from peripheral blood	blood
22	chr7:7984800-7985600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr7:7984800-7985800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:7984800-7985800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:7984800-7985800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr7:7984800-7986000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:7984800-7986600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:7984800-7996800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr7:7985000-7985200	Flanking Active TSS	GM12878-XiMat	blood
30	chr7:7985000-7985600	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr7:7985000-7985800	Enhancers	Primary T cells fromperipheralblood	blood
32	chr7:7985000-7985800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr7:7985000-7986200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr7:7985000-7986400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr7:7985000-7987000	Enhancers	Thymus	Thymus
36	chr7:7985000-7991200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr7:7985000-8003800	Weak transcription	Primary B cells from cord blood	blood

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