Variant report

Variant	rs37946
Chromosome Location	chr7:7994989-7994990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7993781..7999497-chr7:8006665..8011144,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106415	Chromatin interaction
ENSG00000233108	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10272483	1.00[ASN][1000 genomes]
rs12538224	1.00[ASN][1000 genomes]
rs13231445	1.00[ASN][1000 genomes]
rs2041567	1.00[ASN][1000 genomes]
rs34768970	1.00[ASN][1000 genomes]
rs37943	1.00[ASN][1000 genomes]
rs37951	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs37953	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947392	1.00[ASN][1000 genomes]
rs6951010	1.00[ASN][1000 genomes]
rs6976735	1.00[ASN][1000 genomes]
rs718549	1.00[ASN][1000 genomes]
rs73359459	1.00[ASN][1000 genomes]
rs73359463	1.00[ASN][1000 genomes]
rs7779286	1.00[ASN][1000 genomes]
rs7806407	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1020161	chr7:7929384-8047553	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv525502	chr7:7938596-7996590	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv606048	chr7:7938596-7996590	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7984400-7995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:7984400-7996200	Weak transcription	Left Ventricle	heart
3	chr7:7984800-7996800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:7985000-8003800	Weak transcription	Primary B cells from cord blood	blood
5	chr7:7985400-8007600	Weak transcription	Psoas Muscle	Psoas
6	chr7:7986800-8007800	Weak transcription	Ovary	ovary
7	chr7:7987000-7995000	Weak transcription	Thymus	Thymus
8	chr7:7993000-7997800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:7993200-7997800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:7993400-7995800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:7994000-7995600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:7994000-7996800	Enhancers	NHDF-Ad	bronchial
13	chr7:7994000-7997200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:7994200-7995200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:7994200-7995200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:7994200-7995800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:7994200-7997400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr7:7994200-7998400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:7994400-7995800	Weak transcription	Stomach Mucosa	stomach
20	chr7:7994600-7995000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:7994600-7995200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:7994600-7995600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:7994600-7996400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:7994600-7997200	Weak transcription	Fetal Intestine Large	intestine
25	chr7:7994800-7995200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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