Variant report

Variant	rs34772164
Chromosome Location	chr9:25678797-25678798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11999257	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13301551	0.96[EUR][1000 genomes]
rs34583512	1.00[ASN][1000 genomes]
rs35366346	1.00[ASN][1000 genomes]
rs35760967	1.00[ASN][1000 genomes]
rs62533385	1.00[ASN][1000 genomes]
rs62533386	1.00[ASN][1000 genomes]
rs62533387	1.00[ASN][1000 genomes]
rs62533388	1.00[ASN][1000 genomes]
rs62533389	1.00[ASN][1000 genomes]
rs62533390	1.00[ASN][1000 genomes]
rs62533425	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466309	chr9:25157678-25683220	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv613889	chr9:25157678-25683220	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv869035	chr9:25287213-25779281	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv531597	chr9:25325401-25779422	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv613912	chr9:25538362-25722614	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv533233	chr9:25548163-25702906	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv831530	chr9:25563811-25754022	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	esv3389885	chr9:25653001-25688182	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3451258	chr9:25664001-25688182	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv824893	chr9:25667989-25682355	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv3360950	chr9:25676977-25679525	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25676200-25678800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:25676600-25678800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:25676600-25679400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:25677000-25678800	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr9:25677000-25678800	Active TSS	Brain Angular Gyrus	brain
6	chr9:25677000-25678800	Active TSS	Brain Cingulate Gyrus	brain
7	chr9:25677000-25678800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:25677000-25678800	Active TSS	Colonic Mucosa	Colon
9	chr9:25677000-25678800	Active TSS	Colon Smooth Muscle	Colon
10	chr9:25677000-25678800	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr9:25677000-25678800	Active TSS	Fetal Intestine Small	intestine
12	chr9:25677000-25678800	Active TSS	Fetal Kidney	kidney
13	chr9:25677000-25678800	Active TSS	Fetal Muscle Leg	muscle
14	chr9:25677000-25678800	Active TSS	Stomach Mucosa	stomach
15	chr9:25677000-25678800	Active TSS	HSMMtube	muscle
16	chr9:25677000-25679000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:25677000-25679000	Active TSS	Aorta	Aorta
18	chr9:25677000-25679000	Active TSS	Brain Anterior Caudate	brain
19	chr9:25677000-25679000	Active TSS	Ovary	ovary
20	chr9:25677000-25679000	Active TSS	Right Atrium	heart
21	chr9:25677000-25679000	Active TSS	Right Ventricle	heart
22	chr9:25677000-25679000	Active TSS	NHDF-Ad	bronchial
23	chr9:25677000-25679200	Active TSS	Fetal Intestine Large	intestine
24	chr9:25677000-25679200	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr9:25677000-25679200	Active TSS	NHLF	lung
26	chr9:25677200-25678800	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr9:25677200-25678800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:25677200-25678800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:25677200-25678800	Active TSS	Primary B cells from cord blood	blood
30	chr9:25677200-25678800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:25677200-25678800	Active TSS	Brain Substantia Nigra	brain
32	chr9:25677200-25678800	Active TSS	Esophagus	oesophagus
33	chr9:25677200-25678800	Active TSS	Pancreas	Pancrea
34	chr9:25677200-25678800	Active TSS	Placenta Amnion	Placenta Amnion
35	chr9:25677200-25679000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr9:25677400-25678800	Active TSS	H9 Cell Line	embryonic stem cell
37	chr9:25677400-25678800	Active TSS	Fetal Brain Female	brain
38	chr9:25677400-25678800	Active TSS	Gastric	stomach
39	chr9:25677400-25678800	Active TSS	Lung	lung
40	chr9:25677400-25678800	Active TSS	Small Intestine	intestine
41	chr9:25677400-25678800	Bivalent/Poised TSS	Thymus	Thymus
42	chr9:25677400-25679000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:25677400-25679000	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr9:25677600-25678800	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr9:25677600-25678800	Active TSS	Fetal Thymus	thymus
46	chr9:25677800-25679000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:25678200-25679200	Flanking Active TSS	HMEC	breast
48	chr9:25678400-25678800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
49	chr9:25678400-25678800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:25678400-25678800	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood

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