Variant report

Variant	rs34772962
Chromosome Location	chr9:103162021-103162022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11998985	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13284374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13286077	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13286964	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13290800	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13298673	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13302253	1.00[AMR][1000 genomes]
rs34069247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34104764	1.00[AMR][1000 genomes]
rs34179958	1.00[AMR][1000 genomes]
rs34304209	1.00[AMR][1000 genomes]
rs34332248	1.00[AMR][1000 genomes]
rs34407044	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34821647	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34872449	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35550115	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35563956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35997802	0.93[AFR][1000 genomes]
rs35998454	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36068962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36082352	1.00[AMR][1000 genomes]
rs7019474	0.89[AFR][1000 genomes]
rs71507679	1.00[AMR][1000 genomes]
rs71507680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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