Variant report

Variant	rs13298673
Chromosome Location	chr9:103156752-103156753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11998985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13284374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13286077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13286964	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13287099	0.91[EUR][1000 genomes]
rs13290328	0.91[EUR][1000 genomes]
rs13290330	0.91[EUR][1000 genomes]
rs13290800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13293829	0.91[EUR][1000 genomes]
rs13294600	0.91[EUR][1000 genomes]
rs13296977	0.91[EUR][1000 genomes]
rs13297769	0.91[EUR][1000 genomes]
rs13301192	0.91[EUR][1000 genomes]
rs13302253	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13302469	0.91[EUR][1000 genomes]
rs34069247	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34089428	0.91[EUR][1000 genomes]
rs34092424	0.91[EUR][1000 genomes]
rs34104764	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34169614	0.83[EUR][1000 genomes]
rs34179958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34304209	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34314753	0.91[EUR][1000 genomes]
rs34332248	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34407044	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34553251	0.91[EUR][1000 genomes]
rs34622900	0.91[EUR][1000 genomes]
rs34696628	0.91[EUR][1000 genomes]
rs34727324	0.91[EUR][1000 genomes]
rs34772962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34821647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34831686	0.91[EUR][1000 genomes]
rs34872449	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34919065	0.91[EUR][1000 genomes]
rs35051712	0.91[EUR][1000 genomes]
rs35123004	0.91[EUR][1000 genomes]
rs35166393	1.00[EUR][1000 genomes]
rs35415036	0.91[EUR][1000 genomes]
rs35427402	0.91[EUR][1000 genomes]
rs35439180	0.91[EUR][1000 genomes]
rs35550115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35563956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35575118	0.91[EUR][1000 genomes]
rs35747178	0.91[EUR][1000 genomes]
rs35747546	0.91[EUR][1000 genomes]
rs35801424	0.91[EUR][1000 genomes]
rs35970442	0.91[EUR][1000 genomes]
rs35982519	0.91[EUR][1000 genomes]
rs35997802	1.00[AFR][1000 genomes]
rs35998454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36068962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36082352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36148968	0.91[EUR][1000 genomes]
rs7019474	0.87[AFR][1000 genomes]
rs71507670	0.91[EUR][1000 genomes]
rs71507673	0.91[EUR][1000 genomes]
rs71507674	0.91[EUR][1000 genomes]
rs71507676	0.91[EUR][1000 genomes]
rs71507677	0.91[EUR][1000 genomes]
rs71507679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103146400-103157000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:103147600-103157200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:103151800-103160000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:103153400-103157000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:103154000-103158000	Weak transcription	Left Ventricle	heart
6	chr9:103156200-103157200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:103156200-103157400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:103156200-103157600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:103156400-103157600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:103156600-103157200	Weak transcription	A549	lung

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