Variant report

Variant	rs34553251
Chromosome Location	chr9:103080953-103080954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103079486..103081674-chr9:103092591..103094628,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11998985	0.91[EUR][1000 genomes]
rs13284374	0.91[EUR][1000 genomes]
rs13286077	0.91[EUR][1000 genomes]
rs13287099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290330	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290800	0.91[EUR][1000 genomes]
rs13293829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13294600	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13296977	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297769	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13298673	0.91[EUR][1000 genomes]
rs13301192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13302253	0.91[EUR][1000 genomes]
rs13302469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34069247	0.91[EUR][1000 genomes]
rs34089428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34092424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34104764	0.91[EUR][1000 genomes]
rs34169614	0.92[EUR][1000 genomes]
rs34179958	0.91[EUR][1000 genomes]
rs34314753	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34332248	0.91[EUR][1000 genomes]
rs34407044	0.91[EUR][1000 genomes]
rs34622900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34696628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34727324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34821647	0.91[EUR][1000 genomes]
rs34831686	1.00[EUR][1000 genomes]
rs34872449	0.91[EUR][1000 genomes]
rs34919065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35051712	1.00[EUR][1000 genomes]
rs35123004	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35166393	0.91[EUR][1000 genomes]
rs35415036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35427402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35439180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35550115	0.91[EUR][1000 genomes]
rs35563956	0.91[EUR][1000 genomes]
rs35575118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35747178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35747546	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35801424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35970442	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35982519	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35998454	0.91[EUR][1000 genomes]
rs36068962	0.91[EUR][1000 genomes]
rs36082352	0.91[EUR][1000 genomes]
rs36148968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507673	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507676	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71507677	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71507679	0.91[EUR][1000 genomes]
rs71507680	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
2	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:103046600-103092400	Strong transcription	Fetal Thymus	thymus
4	chr9:103048400-103083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:103050600-103086400	Strong transcription	Dnd41	blood
6	chr9:103051000-103088800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:103057600-103112600	Weak transcription	Fetal Brain Male	brain
8	chr9:103058400-103092200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:103058800-103084800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:103063800-103093400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:103063800-103106000	Weak transcription	Esophagus	oesophagus
12	chr9:103064000-103100000	Weak transcription	Colonic Mucosa	Colon
13	chr9:103064200-103093200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:103064800-103104200	Weak transcription	Right Ventricle	heart
15	chr9:103065000-103114200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:103065200-103087600	Weak transcription	Brain Anterior Caudate	brain
17	chr9:103065400-103087400	Weak transcription	Psoas Muscle	Psoas
18	chr9:103066200-103087800	Weak transcription	Gastric	stomach
19	chr9:103066200-103088400	Weak transcription	Lung	lung
20	chr9:103066200-103100400	Weak transcription	Aorta	Aorta
21	chr9:103066200-103112600	Weak transcription	Pancreas	Pancrea
22	chr9:103066200-103113200	Weak transcription	Spleen	Spleen
23	chr9:103066200-103113800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr9:103066800-103091600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:103067000-103086600	Strong transcription	Primary B cells from cord blood	blood
26	chr9:103067600-103112400	Weak transcription	Small Intestine	intestine
27	chr9:103068200-103085200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:103068200-103094000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:103069200-103095400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr9:103069400-103094800	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr9:103069800-103092000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr9:103070000-103093800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr9:103070600-103086800	Strong transcription	HepG2	liver
34	chr9:103072200-103081200	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr9:103072200-103113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:103072400-103085600	Weak transcription	NHLF	lung
37	chr9:103072400-103087600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:103072600-103087600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr9:103072600-103091800	Weak transcription	Brain Hippocampus Middle	brain
40	chr9:103072800-103082200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr9:103072800-103087600	Weak transcription	Adipose Nuclei	Adipose
42	chr9:103073000-103082200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr9:103073800-103081000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr9:103073800-103081000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr9:103073800-103088400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr9:103074000-103113200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:103074600-103087600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr9:103075200-103082200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr9:103075200-103084400	Strong transcription	A549	lung
50	chr9:103075200-103088600	Weak transcription	Ovary	ovary

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