Variant report

Variant	rs13294600
Chromosome Location	chr9:103137134-103137135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103134684..103138813-chr9:103188908..103191193,3	MCF-7	breast:
2	chr9:103130810..103133640-chr9:103135593..103138157,2	K562	blood:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11998985	0.91[EUR][1000 genomes]
rs13284374	0.91[EUR][1000 genomes]
rs13286077	0.91[EUR][1000 genomes]
rs13287099	1.00[EUR][1000 genomes]
rs13290328	1.00[EUR][1000 genomes]
rs13290330	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13290800	0.91[EUR][1000 genomes]
rs13293829	1.00[EUR][1000 genomes]
rs13296977	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13297769	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13298673	0.91[EUR][1000 genomes]
rs13301192	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13302253	0.91[EUR][1000 genomes]
rs13302469	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34069247	0.91[EUR][1000 genomes]
rs34089428	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34092424	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34104764	0.91[EUR][1000 genomes]
rs34169614	0.92[EUR][1000 genomes]
rs34179958	0.91[EUR][1000 genomes]
rs34314753	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34332248	0.91[EUR][1000 genomes]
rs34407044	0.91[EUR][1000 genomes]
rs34553251	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34622900	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34696628	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34727324	1.00[EUR][1000 genomes]
rs34821647	0.91[EUR][1000 genomes]
rs34831686	1.00[EUR][1000 genomes]
rs34872449	0.91[EUR][1000 genomes]
rs34919065	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35051712	1.00[EUR][1000 genomes]
rs35123004	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35166393	0.91[EUR][1000 genomes]
rs35415036	1.00[EUR][1000 genomes]
rs35427402	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35439180	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35550115	0.91[EUR][1000 genomes]
rs35563956	0.91[EUR][1000 genomes]
rs35575118	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35747178	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35747546	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35801424	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35970442	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35982519	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35998454	0.91[EUR][1000 genomes]
rs36068962	0.91[EUR][1000 genomes]
rs36082352	0.91[EUR][1000 genomes]
rs36148968	1.00[EUR][1000 genomes]
rs71507670	1.00[EUR][1000 genomes]
rs71507673	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71507674	1.00[EUR][1000 genomes]
rs71507676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507679	0.91[EUR][1000 genomes]
rs71507680	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103130400-103138000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:103131800-103137800	Weak transcription	HepG2	liver
3	chr9:103134400-103141800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:103134400-103152600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:103136000-103138000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:103136200-103137800	Weak transcription	HMEC	breast
7	chr9:103136200-103137800	Weak transcription	NHEK	skin
8	chr9:103136200-103138000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:103136400-103141600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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