Variant report

Variant	rs71507674
Chromosome Location	chr9:103038193-103038194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103037852..103042243-chr9:103042555..103047658,4	K562	blood:
2	chr9:103037474..103040189-chr9:103187974..103190898,2	K562	blood:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11998985	0.91[EUR][1000 genomes]
rs13284374	0.91[EUR][1000 genomes]
rs13286077	0.91[EUR][1000 genomes]
rs13287099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290330	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290800	0.91[EUR][1000 genomes]
rs13293829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13294600	1.00[EUR][1000 genomes]
rs13296977	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13298673	0.91[EUR][1000 genomes]
rs13301192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13302253	0.91[EUR][1000 genomes]
rs13302469	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34069247	0.91[EUR][1000 genomes]
rs34089428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34092424	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34104764	0.91[EUR][1000 genomes]
rs34169614	0.92[EUR][1000 genomes]
rs34179958	0.91[EUR][1000 genomes]
rs34314753	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34332248	0.91[EUR][1000 genomes]
rs34407044	0.91[EUR][1000 genomes]
rs34553251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34622900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34696628	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34727324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34821647	0.91[EUR][1000 genomes]
rs34831686	1.00[EUR][1000 genomes]
rs34872449	0.91[EUR][1000 genomes]
rs34919065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35051712	1.00[EUR][1000 genomes]
rs35123004	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35166393	0.91[EUR][1000 genomes]
rs35415036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35427402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35439180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35550115	0.91[EUR][1000 genomes]
rs35563956	0.91[EUR][1000 genomes]
rs35575118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35747178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35747546	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35801424	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35970442	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35982519	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35998454	0.91[EUR][1000 genomes]
rs36068962	0.91[EUR][1000 genomes]
rs36082352	0.91[EUR][1000 genomes]
rs36148968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507673	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507676	1.00[EUR][1000 genomes]
rs71507677	1.00[EUR][1000 genomes]
rs71507679	0.91[EUR][1000 genomes]
rs71507680	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv3353349	chr9:103014446-103038360	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102972600-103046600	Weak transcription	Psoas Muscle	Psoas
2	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:102974000-103047600	Weak transcription	Fetal Brain Male	brain
4	chr9:102975800-103045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:102976800-103047800	Weak transcription	Fetal Heart	heart
6	chr9:102979400-103054600	Weak transcription	NHEK	skin
7	chr9:102987400-103045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:102987400-103054600	Weak transcription	Gastric	stomach
9	chr9:102989400-103047200	Weak transcription	GM12878-XiMat	blood
10	chr9:102992600-103039000	Weak transcription	NHDF-Ad	bronchial
11	chr9:102994800-103046600	Weak transcription	Pancreas	Pancrea
12	chr9:102997800-103054400	Weak transcription	Colonic Mucosa	Colon
13	chr9:103003400-103046800	Weak transcription	HMEC	breast
14	chr9:103006000-103039200	Weak transcription	HSMM	muscle
15	chr9:103008800-103039600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:103009400-103047600	Weak transcription	HUVEC	blood vessel
17	chr9:103013000-103047400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:103015000-103046800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:103015400-103039200	Weak transcription	Osteobl	bone
20	chr9:103015400-103039800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:103015400-103046400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr9:103015400-103046600	Weak transcription	Brain Substantia Nigra	brain
23	chr9:103015400-103046800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:103015600-103039400	Weak transcription	NH-A	brain
25	chr9:103015600-103046600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr9:103016000-103044400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr9:103016000-103047200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr9:103021200-103041200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr9:103021800-103044400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:103021800-103044400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:103022000-103047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:103023800-103046200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:103026200-103047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr9:103027800-103039200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:103027800-103046600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr9:103027800-103046600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr9:103028000-103040800	Weak transcription	A549	lung
38	chr9:103028000-103044800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr9:103028000-103046400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:103028200-103039200	Weak transcription	NHLF	lung
41	chr9:103028200-103046200	Weak transcription	Fetal Kidney	kidney
42	chr9:103028400-103046200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:103028600-103044600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:103028600-103046400	Weak transcription	Brain Germinal Matrix	brain
45	chr9:103028800-103038600	Weak transcription	Brain Hippocampus Middle	brain
46	chr9:103029000-103053600	Weak transcription	Hela-S3	cervix
47	chr9:103029200-103041200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr9:103029200-103041600	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr9:103029200-103046000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr9:103029200-103046600	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links