Variant report

Variant	rs35747178
Chromosome Location	chr9:103110399-103110400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:103110375-103110447	MCF-7	breast:	n/a	n/a
2	IRF1	chr9:103110399-103110418	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:103108916..103110922-chr9:103189088..103192439,3	MCF-7	breast:
2	chr9:103109668..103111335-chr9:103213495..103215369,2	K562	blood:
3	chr9:103108891..103111879-chr9:103188016..103191736,3	K562	blood:
4	chr9:103108889..103112022-chr9:103112659..103116565,8	MCF-7	breast:

Variant related genes	Relation type
TEX10	TF binding region
ENSG00000136891	Chromatin interaction
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11998985	0.91[EUR][1000 genomes]
rs13284374	0.91[EUR][1000 genomes]
rs13286077	0.91[EUR][1000 genomes]
rs13287099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290330	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290800	0.91[EUR][1000 genomes]
rs13293829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13294600	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13296977	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297769	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13298673	0.91[EUR][1000 genomes]
rs13301192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13302253	0.91[EUR][1000 genomes]
rs13302469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34069247	0.91[EUR][1000 genomes]
rs34089428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34092424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34104764	0.91[EUR][1000 genomes]
rs34169614	0.92[EUR][1000 genomes]
rs34179958	0.91[EUR][1000 genomes]
rs34314753	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34332248	0.91[EUR][1000 genomes]
rs34407044	0.91[EUR][1000 genomes]
rs34553251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34622900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34696628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34727324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34821647	0.91[EUR][1000 genomes]
rs34831686	1.00[EUR][1000 genomes]
rs34872449	0.91[EUR][1000 genomes]
rs34919065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35051712	1.00[EUR][1000 genomes]
rs35123004	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35166393	0.91[EUR][1000 genomes]
rs35415036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35427402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35439180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35550115	0.91[EUR][1000 genomes]
rs35563956	0.91[EUR][1000 genomes]
rs35575118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35747546	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35801424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35970442	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35982519	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35998454	0.91[EUR][1000 genomes]
rs36068962	0.91[EUR][1000 genomes]
rs36082352	0.91[EUR][1000 genomes]
rs36148968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507673	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507676	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71507677	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71507679	0.91[EUR][1000 genomes]
rs71507680	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103057600-103112600	Weak transcription	Fetal Brain Male	brain
2	chr9:103065000-103114200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:103066200-103112600	Weak transcription	Pancreas	Pancrea
4	chr9:103066200-103113200	Weak transcription	Spleen	Spleen
5	chr9:103066200-103113800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr9:103067600-103112400	Weak transcription	Small Intestine	intestine
7	chr9:103072200-103113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:103074000-103113200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:103078400-103111200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:103078400-103112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:103082800-103111800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr9:103083800-103113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:103088400-103112000	Weak transcription	Brain Germinal Matrix	brain
14	chr9:103088600-103112400	Weak transcription	Brain Angular Gyrus	brain
15	chr9:103088600-103113000	Weak transcription	Fetal Brain Female	brain
16	chr9:103088600-103114400	Weak transcription	Lung	lung
17	chr9:103088800-103112400	Weak transcription	Psoas Muscle	Psoas
18	chr9:103088800-103113400	Weak transcription	Fetal Intestine Small	intestine
19	chr9:103088800-103114400	Weak transcription	Gastric	stomach
20	chr9:103089400-103112800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:103090600-103111600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:103091200-103113200	Weak transcription	Liver	Liver
23	chr9:103092400-103112400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:103092400-103113800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:103092600-103113800	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:103096000-103111000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:103099000-103111800	Strong transcription	K562	blood
28	chr9:103100800-103112600	Weak transcription	Aorta	Aorta
29	chr9:103100800-103113800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:103101000-103111000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:103101000-103113800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr9:103101400-103113200	Weak transcription	Fetal Stomach	stomach
33	chr9:103102000-103114000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:103103200-103110400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:103103800-103110600	Strong transcription	Primary hematopoietic stem cells	blood
36	chr9:103104600-103113800	Weak transcription	Right Ventricle	heart
37	chr9:103104800-103111600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr9:103104800-103111600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr9:103104800-103112600	Weak transcription	Fetal Heart	heart
40	chr9:103105000-103111800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr9:103105000-103112600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr9:103105400-103111000	Strong transcription	Dnd41	blood
43	chr9:103105400-103111200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr9:103105400-103114000	Weak transcription	Brain Substantia Nigra	brain
45	chr9:103105600-103110800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:103105800-103110800	Strong transcription	Primary B cells from cord blood	blood
47	chr9:103106000-103111000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr9:103106000-103111400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr9:103106200-103110400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:103107000-103113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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