Variant report

Variant	rs35998454
Chromosome Location	chr9:103160490-103160491
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103114953..103119242-chr9:103160329..103162600,3	K562	blood:
2	chr9:102858924..102861696-chr9:103159422..103161029,2	MCF-7	breast:
3	chr9:103139380..103141850-chr9:103159485..103162219,2	K562	blood:

Variant related genes	Relation type
ENSG00000119509	Chromatin interaction
ENSG00000023318	Chromatin interaction
ENSG00000136891	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11998985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13284374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13286077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13286964	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13287099	0.91[EUR][1000 genomes]
rs13290328	0.91[EUR][1000 genomes]
rs13290330	0.91[EUR][1000 genomes]
rs13290800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13293829	0.91[EUR][1000 genomes]
rs13294600	0.91[EUR][1000 genomes]
rs13296977	0.91[EUR][1000 genomes]
rs13297769	0.91[EUR][1000 genomes]
rs13298673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13301192	0.91[EUR][1000 genomes]
rs13302253	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13302469	0.91[EUR][1000 genomes]
rs34069247	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34089428	0.91[EUR][1000 genomes]
rs34092424	0.91[EUR][1000 genomes]
rs34104764	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34169614	0.83[EUR][1000 genomes]
rs34179958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34304209	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34314753	0.91[EUR][1000 genomes]
rs34332248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34407044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34553251	0.91[EUR][1000 genomes]
rs34622900	0.91[EUR][1000 genomes]
rs34696628	0.91[EUR][1000 genomes]
rs34727324	0.91[EUR][1000 genomes]
rs34772962	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34821647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34831686	0.91[EUR][1000 genomes]
rs34872449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34919065	0.91[EUR][1000 genomes]
rs35051712	0.91[EUR][1000 genomes]
rs35123004	0.91[EUR][1000 genomes]
rs35166393	1.00[EUR][1000 genomes]
rs35415036	0.91[EUR][1000 genomes]
rs35427402	0.91[EUR][1000 genomes]
rs35439180	0.91[EUR][1000 genomes]
rs35550115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35563956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35575118	0.91[EUR][1000 genomes]
rs35747178	0.91[EUR][1000 genomes]
rs35747546	0.91[EUR][1000 genomes]
rs35801424	0.91[EUR][1000 genomes]
rs35970442	0.91[EUR][1000 genomes]
rs35982519	0.91[EUR][1000 genomes]
rs36068962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36082352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36148968	0.91[EUR][1000 genomes]
rs71507670	0.91[EUR][1000 genomes]
rs71507673	0.91[EUR][1000 genomes]
rs71507674	0.91[EUR][1000 genomes]
rs71507676	0.91[EUR][1000 genomes]
rs71507677	0.91[EUR][1000 genomes]
rs71507679	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103160400-103161200	Weak transcription	K562	blood

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