Variant report

Variant	rs35427402
Chromosome Location	chr9:103104624-103104625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11998985	0.91[EUR][1000 genomes]
rs13284374	0.91[EUR][1000 genomes]
rs13286077	0.91[EUR][1000 genomes]
rs13287099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290330	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13290800	0.91[EUR][1000 genomes]
rs13293829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13294600	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13296977	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297769	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13298673	0.91[EUR][1000 genomes]
rs13301192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13302253	0.91[EUR][1000 genomes]
rs13302469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34069247	0.91[EUR][1000 genomes]
rs34089428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34092424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34104764	0.91[EUR][1000 genomes]
rs34169614	0.92[EUR][1000 genomes]
rs34179958	0.91[EUR][1000 genomes]
rs34314753	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34332248	0.91[EUR][1000 genomes]
rs34407044	0.91[EUR][1000 genomes]
rs34553251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34622900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34696628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34727324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34821647	0.91[EUR][1000 genomes]
rs34831686	1.00[EUR][1000 genomes]
rs34872449	0.91[EUR][1000 genomes]
rs34919065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35051712	1.00[EUR][1000 genomes]
rs35123004	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35166393	0.91[EUR][1000 genomes]
rs35415036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35439180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35550115	0.91[EUR][1000 genomes]
rs35563956	0.91[EUR][1000 genomes]
rs35575118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35747178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35747546	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35801424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35970442	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35982519	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35998454	0.91[EUR][1000 genomes]
rs36068962	0.91[EUR][1000 genomes]
rs36082352	0.91[EUR][1000 genomes]
rs36148968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507673	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507676	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71507677	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71507679	0.91[EUR][1000 genomes]
rs71507680	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103057600-103112600	Weak transcription	Fetal Brain Male	brain
2	chr9:103063800-103106000	Weak transcription	Esophagus	oesophagus
3	chr9:103065000-103114200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:103066200-103112600	Weak transcription	Pancreas	Pancrea
5	chr9:103066200-103113200	Weak transcription	Spleen	Spleen
6	chr9:103066200-103113800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr9:103067600-103112400	Weak transcription	Small Intestine	intestine
8	chr9:103072200-103113800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:103074000-103113200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:103078400-103111200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:103078400-103112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:103078600-103109000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:103079800-103107600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:103080000-103108400	Weak transcription	HSMMtube	muscle
15	chr9:103081200-103107600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:103082800-103111800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr9:103083800-103113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:103086600-103107800	Weak transcription	NHLF	lung
19	chr9:103088400-103112000	Weak transcription	Brain Germinal Matrix	brain
20	chr9:103088600-103107800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:103088600-103112400	Weak transcription	Brain Angular Gyrus	brain
22	chr9:103088600-103113000	Weak transcription	Fetal Brain Female	brain
23	chr9:103088600-103114400	Weak transcription	Lung	lung
24	chr9:103088800-103107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr9:103088800-103108800	Weak transcription	Brain Anterior Caudate	brain
26	chr9:103088800-103112400	Weak transcription	Psoas Muscle	Psoas
27	chr9:103088800-103113400	Weak transcription	Fetal Intestine Small	intestine
28	chr9:103088800-103114400	Weak transcription	Gastric	stomach
29	chr9:103089400-103112800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:103090200-103107400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr9:103090600-103111600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:103090800-103107600	Weak transcription	Osteobl	bone
33	chr9:103091000-103108200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr9:103091000-103110200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr9:103091200-103113200	Weak transcription	Liver	Liver
36	chr9:103092400-103107200	Weak transcription	HUVEC	blood vessel
37	chr9:103092400-103107400	Weak transcription	Fetal Lung	lung
38	chr9:103092400-103107600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr9:103092400-103107600	Weak transcription	NH-A	brain
40	chr9:103092400-103108800	Weak transcription	NHDF-Ad	bronchial
41	chr9:103092400-103112400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:103092400-103113800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr9:103092600-103107800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr9:103092600-103113800	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:103093400-103109000	Weak transcription	Ovary	ovary
46	chr9:103094800-103107600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr9:103095800-103108000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr9:103096000-103111000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:103097400-103104800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr9:103098600-103105200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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