Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1095170	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1341291	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1356481	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1356482	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17161993	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17161994	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17163762	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17163773	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17163774	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17518279	0.90[EUR][1000 genomes]
rs2203763	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2678367	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2795063	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34013846	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34283624	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34782082	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35133329	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35345711	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4661252	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6662301	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223440800-223465600	Weak transcription	Ovary	ovary
2	chr1:223442600-223462200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:223443800-223472600	Weak transcription	Gastric	stomach
4	chr1:223451600-223460800	Weak transcription	Brain Anterior Caudate	brain
5	chr1:223459000-223474200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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