Variant report

Variant	rs34013846
Chromosome Location	chr1:223473477-223473478
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223472503..223474796-chr1:223478639..223480943,2	K562	blood:
2	chr1:223466621..223469312-chr1:223470297..223473880,3	K562	blood:
3	chr1:223473310..223474999-chr1:223493022..223494928,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1095170	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1341291	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1356481	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1356482	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161993	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17161994	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17163762	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17163773	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17163774	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17518279	0.92[EUR][1000 genomes]
rs2203763	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2678367	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2795063	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34283624	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34782082	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34788475	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34827745	0.94[ASN][1000 genomes]
rs35133329	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35345711	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41371046	0.81[AFR][1000 genomes]
rs4661252	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6662301	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv518979	chr1:223468336-223488310	Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223459000-223474200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr1:223466400-223480400	Weak transcription	Pancreas	Pancrea
3	chr1:223470000-223493200	Weak transcription	Esophagus	oesophagus
4	chr1:223472000-223474000	Weak transcription	Primary T cells from cord blood	blood
5	chr1:223472600-223476600	Weak transcription	Placenta	Placenta
6	chr1:223472800-223474000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:223473000-223476000	Enhancers	Fetal Thymus	thymus
8	chr1:223473000-223476200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:223473000-223484400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:223473200-223476200	Enhancers	Thymus	Thymus
11	chr1:223473400-223474200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:223473400-223476200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:223473400-223476200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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