Variant report

Variant	rs34283624
Chromosome Location	chr1:223478575-223478576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1095170	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1341291	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1356481	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1356482	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17161993	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17161994	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17163762	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17163773	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17163774	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17518279	0.91[EUR][1000 genomes]
rs2203763	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2678367	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2795063	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34013846	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34782082	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34788475	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34827745	0.93[AFR][1000 genomes]
rs35133329	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35345711	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4661252	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6662301	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv518979	chr1:223468336-223488310	Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223466400-223480400	Weak transcription	Pancreas	Pancrea
2	chr1:223470000-223493200	Weak transcription	Esophagus	oesophagus
3	chr1:223473000-223484400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:223475800-223480800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:223476000-223482000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:223476200-223480800	Weak transcription	Thymus	Thymus
7	chr1:223476200-223481200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:223476200-223481600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:223478400-223478600	Enhancers	Placenta	Placenta

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