Variant report

Variant	rs34827745
Chromosome Location	chr1:223480569-223480570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1095170	0.90[ASN][1000 genomes]
rs1341291	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1356481	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1356482	0.94[ASN][1000 genomes]
rs17163773	0.92[AFR][1000 genomes]
rs17163774	0.92[AFR][1000 genomes]
rs17163789	0.83[AFR][1000 genomes]
rs1850562	0.81[AFR][1000 genomes]
rs1856933	0.81[AFR][1000 genomes]
rs2096082	0.81[AFR][1000 genomes]
rs2176504	0.81[AFR][1000 genomes]
rs2176505	0.81[AFR][1000 genomes]
rs2176506	0.83[AFR][1000 genomes]
rs2203763	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2678367	0.87[ASN][1000 genomes]
rs2795063	0.90[ASN][1000 genomes]
rs34013846	0.94[ASN][1000 genomes]
rs34283624	0.93[AFR][1000 genomes]
rs34468460	0.84[AFR][1000 genomes]
rs34782082	0.92[AFR][1000 genomes]
rs35345711	0.87[ASN][1000 genomes]
rs4661238	0.81[AFR][1000 genomes]
rs4661239	0.81[AFR][1000 genomes]
rs4661252	0.90[ASN][1000 genomes]
rs6662301	0.89[ASN][1000 genomes]
rs66768536	0.81[AFR][1000 genomes]
rs66867621	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv518979	chr1:223468336-223488310	Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223470000-223493200	Weak transcription	Esophagus	oesophagus
2	chr1:223473000-223484400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:223475800-223480800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:223476000-223482000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:223476200-223480800	Weak transcription	Thymus	Thymus
6	chr1:223476200-223481200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr1:223476200-223481600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr1:223480400-223481800	Enhancers	Pancreas	Pancrea
9	chr1:223480400-223482200	Enhancers	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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