Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:25429055..25432240-chr7:25604579..25606349,45	MCF-7	breast:
2	chr7:25298959..25300333-chr7:25428102..25430106,21	MCF-7	breast:
3	chr7:25428848..25430407-chr7:25605173..25606452,6	MCF-7	breast:
4	chr7:25299070..25299853-chr7:25429198..25430452,5	MCF-7	breast:
5	chr7:25298962..25299912-chr7:25428816..25430030,4	K562	blood:
6	chr7:25429098..25432014-chr7:25608292..25610212,2	K562	blood:
7	chr7:25301835..25302690-chr7:25429164..25429768,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11973103	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11979879	0.92[EUR][1000 genomes]
rs11982704	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1610043	0.96[EUR][1000 genomes]
rs17151481	0.92[EUR][1000 genomes]
rs55709634	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56799371	0.92[EUR][1000 genomes]
rs58534269	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58828194	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59093374	0.96[EUR][1000 genomes]
rs60624646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60942066	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6942516	0.92[EUR][1000 genomes]
rs6945408	0.88[EUR][1000 genomes]
rs73284983	0.96[EUR][1000 genomes]
rs73284987	0.96[EUR][1000 genomes]
rs73284989	0.96[EUR][1000 genomes]
rs73284993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73287006	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7793740	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7794018	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25416200-25431600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:25425600-25431800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:25426200-25430600	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:25426400-25431400	Weak transcription	Fetal Kidney	kidney
5	chr7:25426400-25432400	Weak transcription	Right Atrium	heart
6	chr7:25426600-25430200	Weak transcription	Fetal Brain Female	brain
7	chr7:25426600-25431400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:25426600-25431400	Weak transcription	Fetal Stomach	stomach
9	chr7:25427000-25432000	Weak transcription	Fetal Brain Male	brain
10	chr7:25427000-25432400	Weak transcription	Pancreas	Pancrea
11	chr7:25428200-25430400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr7:25428400-25430200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr7:25428800-25429800	Enhancers	Fetal Muscle Leg	muscle
14	chr7:25428800-25430400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr7:25429000-25430200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:25429400-25429800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:25429600-25431200	Weak transcription	Fetal Lung	lung
18	chr7:25429600-25431800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search: