Variant report
| Variant | rs56799371 |
|---|---|
| Chromosome Location | chr7:25436459-25436460 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11972933 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11973103 | 0.96[EUR][1000 genomes] |
| rs11979879 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11982704 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1610043 | 0.88[EUR][1000 genomes] |
| rs17151481 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34809224 | 0.92[EUR][1000 genomes] |
| rs55709634 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58534269 | 0.96[EUR][1000 genomes] |
| rs58828194 | 0.96[EUR][1000 genomes] |
| rs59093374 | 0.88[EUR][1000 genomes] |
| rs60624646 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60942066 | 0.92[EUR][1000 genomes] |
| rs6942516 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6945408 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73284983 | 0.88[EUR][1000 genomes] |
| rs73284987 | 0.88[EUR][1000 genomes] |
| rs73284989 | 0.88[EUR][1000 genomes] |
| rs73284993 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73287006 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7793740 | 0.96[EUR][1000 genomes] |
| rs7794018 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs929239 | 0.86[ASN][1000 genomes] |
| rs929240 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv606424 | chr7:24982529-25466521 | Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 79 gene(s) | inside rSNPs | diseases |
| 2 | nsv606426 | chr7:25254125-25621579 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016813 | chr7:25405859-26150509 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 108 gene(s) | inside rSNPs | diseases |
| 4 | nsv538803 | chr7:25405859-26150509 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 108 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:25431400-25437000 | Enhancers | Fetal Kidney | kidney |
| 2 | chr7:25436400-25436800 | Enhancers | Fetal Stomach | stomach |
