Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11973103	0.92[EUR][1000 genomes]
rs11979879	0.88[EUR][1000 genomes]
rs11982704	0.88[EUR][1000 genomes]
rs1610043	1.00[EUR][1000 genomes]
rs17151481	0.88[EUR][1000 genomes]
rs34809224	0.96[EUR][1000 genomes]
rs55709634	0.92[EUR][1000 genomes]
rs56799371	0.88[EUR][1000 genomes]
rs58534269	0.92[EUR][1000 genomes]
rs58828194	0.92[EUR][1000 genomes]
rs59093374	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60624646	0.96[EUR][1000 genomes]
rs60942066	0.88[EUR][1000 genomes]
rs6942516	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6945408	0.84[EUR][1000 genomes]
rs73284983	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284989	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284993	1.00[EUR][1000 genomes]
rs73287006	0.92[EUR][1000 genomes]
rs7793740	0.92[EUR][1000 genomes]
rs7794018	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25416200-25425000	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:25416200-25431600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:25419800-25423000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:25421400-25422000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:25421400-25428400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:25421600-25422000	Enhancers	Brain Germinal Matrix	brain
7	chr7:25421600-25422400	Enhancers	Fetal Kidney	kidney
8	chr7:25421800-25422000	Enhancers	Fetal Lung	lung
9	chr7:25421800-25422200	Enhancers	Esophagus	oesophagus
10	chr7:25421800-25422200	Enhancers	Fetal Muscle Leg	muscle
11	chr7:25421800-25422200	Enhancers	Fetal Stomach	stomach
12	chr7:25421800-25422200	Enhancers	Pancreas	Pancrea
13	chr7:25421800-25422800	Enhancers	Fetal Brain Female	brain
14	chr7:25421800-25423200	Weak transcription	Gastric	stomach

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