Variant report
| Variant | rs34812771 |
|---|---|
| Chromosome Location | chr13:61768831-61768832 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12428534 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12428563 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12864322 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12868869 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12875656 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1384851 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1384852 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1384854 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1514551 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17051907 | 0.88[EUR][1000 genomes] |
| rs17842629 | 0.94[EUR][1000 genomes] |
| rs2090143 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3102186 | 0.82[ASN][1000 genomes] |
| rs3102188 | 0.82[ASN][1000 genomes] |
| rs3127290 | 0.82[ASN][1000 genomes] |
| rs34161939 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35230287 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35451678 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35672908 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35762112 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35811483 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4293270 | 0.88[EUR][1000 genomes] |
| rs4886315 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4886319 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7991533 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9570517 | 0.82[ASN][1000 genomes] |
| rs9570519 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832627 | chr13:61642811-61829217 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3444432 | chr13:61665252-61781081 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900243 | chr13:61711163-61799269 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61765200-61769200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
