Variant report
| Variant | rs17842629 |
|---|---|
| Chromosome Location | chr13:61676715-61676716 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12428534 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12428563 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12864322 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12868869 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12875656 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1384851 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1384852 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1384854 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1514551 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17051907 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2090143 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34161939 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34812771 | 0.94[EUR][1000 genomes] |
| rs35230287 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35451678 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35672908 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35762112 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35811483 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4243019 | 0.93[AMR][1000 genomes] |
| rs4293270 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4886298 | 0.97[AMR][1000 genomes] |
| rs4886315 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4886319 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs59774285 | 0.93[AMR][1000 genomes] |
| rs7991533 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832626 | chr13:61545191-61698233 | Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv832627 | chr13:61642811-61829217 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3444432 | chr13:61665252-61781081 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3444732 | chr13:61674951-61678349 | Strong transcription Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61672600-61677000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
