Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12428534	0.86[AMR][1000 genomes]
rs12428563	0.86[AMR][1000 genomes]
rs12864322	0.86[AMR][1000 genomes]
rs12875656	0.86[AMR][1000 genomes]
rs1384851	0.86[AMR][1000 genomes]
rs1384852	0.86[AMR][1000 genomes]
rs1384854	0.86[AMR][1000 genomes]
rs1514551	0.86[AMR][1000 genomes]
rs17051907	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17059254	0.99[ASN][1000 genomes]
rs17842629	0.97[AMR][1000 genomes]
rs2090143	0.86[AMR][1000 genomes]
rs34161939	0.86[AMR][1000 genomes]
rs35230287	0.86[AMR][1000 genomes]
rs35451678	0.86[AMR][1000 genomes]
rs35672908	0.86[AMR][1000 genomes]
rs35762112	0.86[AMR][1000 genomes]
rs35811483	0.86[AMR][1000 genomes]
rs4243019	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4293270	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4886315	0.90[AMR][1000 genomes]
rs4886319	0.90[AMR][1000 genomes]
rs59774285	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61603600-61620400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61619600-61620800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:61619600-61621000	Enhancers	Fetal Heart	heart
4	chr13:61620000-61620800	Enhancers	Rectal Smooth Muscle	rectum
5	chr13:61620000-61621000	Enhancers	Colon Smooth Muscle	Colon

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