Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12428534	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12428563	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12864322	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12868869	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12875656	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1384851	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1384852	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1384854	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1514551	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17051907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17842629	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2090143	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34161939	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34812771	0.88[EUR][1000 genomes]
rs35230287	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35451678	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35672908	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35762112	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35811483	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4243019	0.93[AMR][1000 genomes]
rs4886298	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4886315	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4886319	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59774285	0.93[AMR][1000 genomes]
rs7991533	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61666600-61669400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61668400-61669600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:61668400-61669600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:61668600-61669600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:61668600-61669600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:61668600-61669800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:61668600-61669800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:61668600-61669800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr13:61668600-61669800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr13:61668600-61670200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:61668800-61669000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:61668800-61669200	Weak transcription	H9 Cell Line	embryonic stem cell

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