Variant report

Variant	rs34840470
Chromosome Location	chr4:57709860-57709861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11721387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11726410	0.91[ASN][1000 genomes]
rs11726443	0.91[ASN][1000 genomes]
rs11726548	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11727329	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11731657	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13123018	0.83[ASN][1000 genomes]
rs13125082	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13128671	0.83[ASN][1000 genomes]
rs13130600	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13130604	0.83[ASN][1000 genomes]
rs2412761	0.91[ASN][1000 genomes]
rs34308849	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34937594	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35185186	0.83[ASN][1000 genomes]
rs35318869	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413466	0.91[ASN][1000 genomes]
rs4443350	0.91[ASN][1000 genomes]
rs56143151	0.91[ASN][1000 genomes]
rs62308068	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62308099	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308100	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308107	1.00[ASN][1000 genomes]
rs62308153	0.91[ASN][1000 genomes]
rs66619445	0.83[ASN][1000 genomes]
rs6839166	0.91[ASN][1000 genomes]
rs7684642	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685053	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9055	0.83[ASN][1000 genomes]
rs9760540	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57709400-57710000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
2	chr4:57709400-57710000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:57709400-57710000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:57709400-57710000	Enhancers	Fetal Muscle Leg	muscle
5	chr4:57709400-57710200	Enhancers	Ovary	ovary
6	chr4:57709600-57710000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:57709600-57710000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr4:57709600-57710000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
9	chr4:57709600-57710000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr4:57709600-57710000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:57709600-57710000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:57709600-57710000	Enhancers	Adipose Nuclei	Adipose
13	chr4:57709600-57710000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr4:57709600-57710000	Enhancers	Fetal Lung	lung
15	chr4:57709600-57710000	Enhancers	Gastric	stomach
16	chr4:57709600-57710000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:57709600-57710000	Enhancers	HMEC	breast
18	chr4:57709600-57710200	Enhancers	Pancreas	Pancrea
19	chr4:57709600-57710800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
20	chr4:57709800-57710000	Flanking Active TSS	K562	blood
21	chr4:57709800-57710200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr4:57709800-57710200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:57709800-57710800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
24	chr4:57709800-57720000	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links