Variant report

Variant	rs9760540
Chromosome Location	chr4:57741620-57741621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:57740477..57743269-chr4:57772989..57775618,2	MCF-7	breast:
2	chr4:57739739..57741859-chr4:57787716..57790599,2	MCF-7	breast:
3	chr4:57741268..57742885-chr4:57744853..57746606,2	K562	blood:
4	chr4:57741072..57742982-chr4:57773976..57775914,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000084093	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11721387	0.82[ASN][1000 genomes]
rs11726410	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726443	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726548	0.82[ASN][1000 genomes]
rs11727329	1.00[ASN][1000 genomes]
rs11730396	0.82[EUR][1000 genomes]
rs11730476	0.93[AFR][1000 genomes]
rs11731657	0.82[ASN][1000 genomes]
rs13123018	0.92[ASN][1000 genomes]
rs13125082	1.00[ASN][1000 genomes]
rs13128671	0.92[ASN][1000 genomes]
rs13130600	1.00[ASN][1000 genomes]
rs13130604	0.92[ASN][1000 genomes]
rs2412761	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34308849	0.91[ASN][1000 genomes]
rs34840470	0.91[ASN][1000 genomes]
rs34937594	0.91[ASN][1000 genomes]
rs35185186	0.92[ASN][1000 genomes]
rs35318869	0.91[ASN][1000 genomes]
rs4413466	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4443350	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865156	0.95[AFR][1000 genomes]
rs4865157	0.96[AFR][1000 genomes]
rs4865158	0.97[AFR][1000 genomes]
rs4865159	0.95[AFR][1000 genomes]
rs4865160	0.91[AFR][1000 genomes]
rs56143151	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56309796	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62308068	0.82[ASN][1000 genomes]
rs62308099	0.91[ASN][1000 genomes]
rs62308100	0.91[ASN][1000 genomes]
rs62308107	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62308153	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554393	0.98[AFR][1000 genomes]
rs6554394	0.95[AFR][1000 genomes]
rs66619445	0.92[ASN][1000 genomes]
rs6816950	0.90[AFR][1000 genomes]
rs6835102	0.92[AFR][1000 genomes]
rs6835108	0.95[AFR][1000 genomes]
rs6839166	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839845	0.94[AFR][1000 genomes]
rs6840805	0.95[AFR][1000 genomes]
rs6857226	0.83[AFR][1000 genomes]
rs7684642	0.91[ASN][1000 genomes]
rs7685053	0.91[ASN][1000 genomes]
rs9055	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv822561	chr4:57736121-57747867	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57738000-57742800	Weak transcription	Spleen	Spleen
2	chr4:57738000-57744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:57738200-57746400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:57741400-57741800	Enhancers	GM12878-XiMat	blood
5	chr4:57741400-57750800	Weak transcription	H1 Cell Line	embryonic stem cell

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