Variant report
| Variant | rs62308107 |
|---|---|
| Chromosome Location | chr4:57731639-57731640 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11721387 | 0.91[ASN][1000 genomes] |
| rs11726410 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11726443 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11726548 | 0.91[ASN][1000 genomes] |
| rs11727329 | 0.91[ASN][1000 genomes] |
| rs11730396 | 0.82[EUR][1000 genomes] |
| rs11731657 | 0.91[ASN][1000 genomes] |
| rs13123018 | 0.83[ASN][1000 genomes] |
| rs13125082 | 0.91[ASN][1000 genomes] |
| rs13128671 | 0.83[ASN][1000 genomes] |
| rs13130600 | 0.91[ASN][1000 genomes] |
| rs13130604 | 0.83[ASN][1000 genomes] |
| rs2412761 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34308849 | 1.00[ASN][1000 genomes] |
| rs34840470 | 1.00[ASN][1000 genomes] |
| rs34937594 | 1.00[ASN][1000 genomes] |
| rs35185186 | 0.83[ASN][1000 genomes] |
| rs35318869 | 1.00[ASN][1000 genomes] |
| rs4413466 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4443350 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs56143151 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs56309796 | 0.86[EUR][1000 genomes] |
| rs62308068 | 0.91[ASN][1000 genomes] |
| rs62308099 | 1.00[ASN][1000 genomes] |
| rs62308100 | 1.00[ASN][1000 genomes] |
| rs62308110 | 0.86[AFR][1000 genomes] |
| rs62308153 | 0.91[ASN][1000 genomes] |
| rs66619445 | 0.83[ASN][1000 genomes] |
| rs6839166 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7684642 | 1.00[ASN][1000 genomes] |
| rs7685053 | 1.00[ASN][1000 genomes] |
| rs9055 | 0.83[ASN][1000 genomes] |
| rs9760540 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868815 | chr4:57114268-58084688 | Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 88 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012287 | chr4:57652778-57853485 | Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012125 | chr4:57668229-57865803 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:57727800-57737600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr4:57727800-57740600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
