Variant report

Variant	rs34892339
Chromosome Location	chr8:130080791-130080792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10105449	0.91[EUR][1000 genomes]
rs10435553	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10435554	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10435555	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10448000	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1157275	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12541644	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12541935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543251	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13248403	0.88[AFR][1000 genomes]
rs13279328	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1372442	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1372443	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1372453	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2395867	0.81[AFR][1000 genomes]
rs34294444	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34294531	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34495693	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34871599	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35658327	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35721910	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4236737	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4302810	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4333552	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4371972	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4385435	0.86[AFR][1000 genomes]
rs4493878	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526322	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4551306	0.88[AFR][1000 genomes]
rs4566994	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613963	0.93[EUR][1000 genomes]
rs4636163	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4644199	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4733538	0.92[AFR][1000 genomes]
rs4733672	0.87[AFR][1000 genomes]
rs57797099	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59669561	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470676	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6470677	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6470692	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6470694	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66748173	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs66879839	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67401439	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67459926	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989490	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6994850	0.88[AFR][1000 genomes]
rs6996806	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6998898	0.96[AFR][1000 genomes]
rs7004935	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7006185	0.83[AFR][1000 genomes]
rs73382040	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73382043	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815639	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816364	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820114	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7832166	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832400	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832457	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832834	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833157	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834731	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7836336	0.90[AFR][1000 genomes]
rs7836429	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7840107	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843664	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7843894	0.89[AFR][1000 genomes]
rs9643242	0.80[EUR][1000 genomes]
rs9650100	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650101	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130072200-130080800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130074200-130083400	Weak transcription	Thymus	Thymus
3	chr8:130074400-130081000	Weak transcription	HSMMtube	muscle
4	chr8:130078000-130081200	Enhancers	Ovary	ovary
5	chr8:130078000-130081800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:130079000-130081200	Enhancers	Fetal Muscle Leg	muscle
7	chr8:130079000-130081400	Enhancers	Adipose Nuclei	Adipose
8	chr8:130079000-130081800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:130079000-130082800	Enhancers	Fetal Stomach	stomach
10	chr8:130079200-130081400	Enhancers	Fetal Lung	lung
11	chr8:130079200-130081600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:130079200-130081800	Enhancers	NHDF-Ad	bronchial
13	chr8:130079400-130084000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:130079800-130080800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:130079800-130080800	Weak transcription	Osteobl	bone
16	chr8:130080200-130080800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:130080200-130081000	Enhancers	Pancreas	Pancrea
18	chr8:130080200-130081200	Enhancers	Right Atrium	heart
19	chr8:130080200-130081800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:130080400-130082000	Weak transcription	Fetal Thymus	thymus
21	chr8:130080400-130083000	Strong transcription	Dnd41	blood
22	chr8:130080600-130080800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:130080600-130081000	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr8:130080600-130081200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:130080600-130082000	Enhancers	Muscle Satellite Cultured Cells	--

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