Variant report

Variant	rs9643242
Chromosome Location	chr8:130028600-130028601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10105449	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10435553	0.80[EUR][1000 genomes]
rs10435555	0.80[EUR][1000 genomes]
rs10448000	0.80[EUR][1000 genomes]
rs10505531	0.81[AMR][1000 genomes]
rs1157275	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12541935	0.80[EUR][1000 genomes]
rs13248403	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13279328	0.80[EUR][1000 genomes]
rs1372442	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1372443	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1372453	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16903947	0.81[AMR][1000 genomes]
rs2395867	0.81[AMR][1000 genomes]
rs34294444	0.80[EUR][1000 genomes]
rs34294531	0.80[EUR][1000 genomes]
rs34495693	0.80[EUR][1000 genomes]
rs34892339	0.80[EUR][1000 genomes]
rs35658327	0.80[EUR][1000 genomes]
rs4236737	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4302810	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4333552	0.81[AFR][1000 genomes]
rs4371972	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4385435	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4493878	0.80[EUR][1000 genomes]
rs4526322	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4551306	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4566994	0.80[EUR][1000 genomes]
rs4613963	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4636163	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4644199	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4733672	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57797099	0.80[EUR][1000 genomes]
rs6470676	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6470677	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6470692	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67401439	0.80[EUR][1000 genomes]
rs6994850	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6998898	0.81[AFR][1000 genomes]
rs7006185	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7013044	0.85[AMR][1000 genomes]
rs73382040	0.80[EUR][1000 genomes]
rs73382043	0.80[EUR][1000 genomes]
rs7815639	0.80[EUR][1000 genomes]
rs7820114	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7833157	0.80[EUR][1000 genomes]
rs7834731	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7836336	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7836429	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7840107	0.80[EUR][1000 genomes]
rs7843664	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9650101	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv971606	chr8:130025407-130032870	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130025200-130035800	Weak transcription	Fetal Thymus	thymus
2	chr8:130028200-130031800	Strong transcription	Dnd41	blood

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