Variant report

Variant	rs34893713
Chromosome Location	chr13:40103911-40103912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PROSER1-3	chr13:40100016-40107556	NONHSAT033305

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6563724	0.85[AFR][1000 genomes]
rs6563725	0.85[AFR][1000 genomes]
rs730249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338567	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7992600	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1050137	chr13:40090742-40118499	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40096800-40110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:40099400-40106000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:40101600-40105000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:40101600-40110400	Weak transcription	Psoas Muscle	Psoas
5	chr13:40102600-40105000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr13:40102600-40110600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr13:40102800-40104200	Weak transcription	Right Ventricle	heart
8	chr13:40102800-40104200	Enhancers	Osteobl	bone
9	chr13:40102800-40104400	Weak transcription	Right Atrium	heart
10	chr13:40102800-40104800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:40102800-40104800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:40102800-40104800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr13:40102800-40105000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:40102800-40105000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr13:40102800-40105000	Weak transcription	Colon Smooth Muscle	Colon
16	chr13:40102800-40105000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr13:40102800-40106000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr13:40102800-40106400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr13:40102800-40107600	Weak transcription	Ovary	ovary
20	chr13:40102800-40107800	Weak transcription	Fetal Brain Male	brain
21	chr13:40102800-40110400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr13:40102800-40110800	Weak transcription	Brain Hippocampus Middle	brain
23	chr13:40102800-40111200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr13:40103000-40104400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:40103000-40105000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr13:40103000-40105800	Enhancers	NHDF-Ad	bronchial
27	chr13:40103000-40109000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr13:40103200-40104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:40103200-40104400	Weak transcription	NHEK	skin
30	chr13:40103200-40104600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:40103200-40104800	Weak transcription	Adipose Nuclei	Adipose
32	chr13:40103200-40104800	Weak transcription	A549	lung
33	chr13:40103200-40104800	Weak transcription	HSMMtube	muscle
34	chr13:40103200-40105000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr13:40103200-40105000	Weak transcription	Brain Substantia Nigra	brain
36	chr13:40103200-40105000	Weak transcription	HMEC	breast
37	chr13:40103200-40105200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:40103200-40105600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr13:40103200-40108400	Weak transcription	Fetal Brain Female	brain
40	chr13:40103200-40110800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr13:40103400-40104400	Weak transcription	Fetal Heart	heart
42	chr13:40103400-40104800	Weak transcription	Fetal Lung	lung
43	chr13:40103400-40105000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr13:40103400-40105000	Weak transcription	NHLF	lung
45	chr13:40103400-40105400	Weak transcription	HSMM	muscle
46	chr13:40103400-40105600	Weak transcription	Fetal Muscle Leg	muscle
47	chr13:40103600-40104000	Weak transcription	Left Ventricle	heart
48	chr13:40103600-40104800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr13:40103600-40104800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr13:40103800-40104000	Enhancers	NH-A	brain

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