Variant report

Variant	rs7338567
Chromosome Location	chr13:40100370-40100371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PROSER1-3	chr13:40100016-40107556	NONHSAT033305

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34893713	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4943673	0.81[JPT][hapmap]
rs730249	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1050137	chr13:40090742-40118499	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40077600-40101400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:40090600-40100800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:40090600-40102400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr13:40090800-40102400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:40093800-40100800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:40096200-40101600	Weak transcription	Brain Angular Gyrus	brain
7	chr13:40096600-40101400	Weak transcription	Aorta	Aorta
8	chr13:40096800-40100600	Weak transcription	Ovary	ovary
9	chr13:40096800-40101400	Weak transcription	Right Atrium	heart
10	chr13:40096800-40102000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:40096800-40110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:40097000-40101200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:40098600-40101200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr13:40098800-40101200	Weak transcription	HMEC	breast
15	chr13:40098800-40102000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr13:40098800-40102400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr13:40099000-40101400	Weak transcription	NHEK	skin
18	chr13:40099000-40102400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:40099400-40101000	Weak transcription	Brain Substantia Nigra	brain
20	chr13:40099400-40102200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr13:40099400-40102200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr13:40099400-40102200	Weak transcription	Brain Hippocampus Middle	brain
23	chr13:40099400-40106000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:40099600-40102000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr13:40099600-40102400	Enhancers	Osteobl	bone
26	chr13:40099800-40100600	Weak transcription	Left Ventricle	heart
27	chr13:40099800-40103000	Weak transcription	Fetal Lung	lung
28	chr13:40100000-40100800	Weak transcription	Right Ventricle	heart
29	chr13:40100200-40100600	Weak transcription	Fetal Heart	heart
30	chr13:40100200-40102200	Enhancers	NHDF-Ad	bronchial
31	chr13:40100200-40102400	Enhancers	Muscle Satellite Cultured Cells	--

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