Variant report

Variant	rs34925826
Chromosome Location	chr4:100356584-100356585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:100356538-100356588	RPTEC	kidney:	n/a
2	chr4:100356538-100356588	GM12891	blood:	n/a
3	chr4:100356538-100356588	GM19239	blood:	n/a
4	chr4:100356538-100356588	MCF10A-Er-Src	breast:	n/a
5	chr4:100356538-100356588	HEK293	kidney:	embryo
6	chr4:100356538-100356588	HepG2	liver:	n/a
7	chr4:100356538-100356588	A549	lung:	n/a
8	chr4:100356538-100356588	AG10803	skin:	n/a
9	chr4:100356538-100356588	PFSK-1	brain:	n/a
10	chr4:100356538-100356588	NHBE	bronchial:	n/a
11	chr4:100356538-100356588	NB4	blood:	n/a
12	chr4:100356538-100356588	Jurkat	blood:	n/a
13	chr4:100356538-100356588	HCT-116	colon:	n/a
14	chr4:100356538-100356588	ECC-1	luminal epithelium:	n/a
15	chr4:100356538-100356588	HMEC	breast:	n/a
16	chr4:100356538-100356588	HUVEC	blood vessel:	n/a
17	chr4:100356538-100356588	AoSMC	blood vessel:	n/a
18	chr4:100356538-100356588	SAEC	small airway:	n/a
19	chr4:100356538-100356588	BE2_C	brain:	n/a
20	chr4:100356538-100356588	Hepatocyte	liver:	n/a
21	chr4:100356538-100356588	HAEpiC	amniotic membrane:	n/a
22	chr4:100356538-100356588	HCF	heart:	n/a
23	chr4:100356538-100356588	CMK	blood:	n/a
24	chr4:100356538-100356588	AG09309	skin:	n/a
25	chr4:100356538-100356588	GM12892	blood:	n/a
26	chr4:100356538-100356588	K562	blood:	n/a
27	chr4:100356538-100356588	PrEC	prostate:	n/a
28	chr4:100356538-100356588	AG04450	lung:	fetal
29	chr4:100356538-100356588	ProgFib	skin:	n/a
30	chr4:100356538-100356588	HRE	kidney:	n/a
31	chr4:100356538-100356588	NHDF-neo	bronchial:	n/a
32	chr4:100356538-100356588	NT2-D1	testis:	n/a
33	chr4:100356538-100356588	HCPEpiC	choroid plexus:	n/a
34	chr4:100356538-100356588	HCM	heart:	n/a
35	chr4:100356538-100356588	HNPCEpiC	eye:	n/a
36	chr4:100356538-100356588	GM06990	blood:	n/a
37	chr4:100356538-100356588	HPAEpiC	pulmonary alveolar:	n/a
38	chr4:100356538-100356588	SK-N-SH	brain:	n/a
39	chr4:100356538-100356588	SK-N-MC	brain:	n/a
40	chr4:100356538-100356588	MCF-7	breast:	n/a
41	chr4:100356538-100356588	HRCEpiC	kidney:	n/a
42	chr4:100356538-100356588	T-47D	breast:	n/a
43	chr4:100356538-100356588	AG09319	gingival:	n/a
44	chr4:100356538-100356588	H1-hESC	embryonic stem cell:	embryo
45	chr4:100356538-100356588	IMR90	lung:	fetal
46	chr4:100356538-100356588	Hela-S3	cervix:	n/a
47	chr4:100356538-100356588	AG04449	skin:	fetal
48	chr4:100356538-100356588	ovcar-3	ovarian:	n/a
49	chr4:100356538-100356588	PANC-1	pancreas:	n/a
50	chr4:100356538-100356588	HEEpiC	esophagus:	n/a

No data

Variant related genes	Relation type
ADH7	CpG island

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1573496	0.94[AMR][1000 genomes]
rs17529509	0.94[AMR][1000 genomes]
rs17589306	0.94[AMR][1000 genomes]
rs2119889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2165672	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3355763	chr4:100070566-100376814	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1014237	chr4:100102701-100365700	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1010988	chr4:100105463-100444445	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1000659	chr4:100117276-100444445	Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3353320	chr4:100147870-100425701	Genic enhancers ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv3394995	chr4:100147890-100425671	Enhancers Genic enhancers Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv879660	chr4:100284199-100380148	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1847619	chr4:100321443-100430924	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv517344	chr4:100322445-100363569	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3584518	chr4:100322445-100377763	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv3584519	chr4:100323870-100477462	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv3584520	chr4:100324071-100400696	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100356000-100359800	Enhancers	Stomach Mucosa	stomach
2	chr4:100356200-100356600	Enhancers	HMEC	breast
3	chr4:100356200-100357000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:100356200-100358000	Enhancers	NHEK	skin
5	chr4:100356400-100357000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:100356400-100358800	Weak transcription	Esophagus	oesophagus

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