Variant report

Variant	rs34927488
Chromosome Location	chr4:149093606-149093607
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34043561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34201038	1.00[EUR][1000 genomes]
rs34936098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35591475	1.00[EUR][1000 genomes]
rs35644313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71616579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72726692	1.00[AFR][1000 genomes]
rs7661326	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:149068000-149097400	Weak transcription	Spleen	Spleen
3	chr4:149076000-149094600	Weak transcription	Fetal Stomach	stomach
4	chr4:149084000-149094400	Weak transcription	Pancreas	Pancrea
5	chr4:149084000-149106200	Weak transcription	Lung	lung
6	chr4:149086200-149095000	Weak transcription	Stomach Mucosa	stomach
7	chr4:149087600-149094200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:149088000-149113200	Weak transcription	Adipose Nuclei	Adipose
10	chr4:149088000-149113600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:149088400-149113000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain
13	chr4:149089200-149095400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:149092400-149113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:149093000-149094400	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr4:149093000-149095000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr4:149093000-149095800	Weak transcription	Colonic Mucosa	Colon
18	chr4:149093000-149102000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:149093000-149102000	Weak transcription	Left Ventricle	heart
20	chr4:149093200-149094200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:149093200-149094200	Weak transcription	Small Intestine	intestine
22	chr4:149093400-149093800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links