Variant report

Variant	rs34936098
Chromosome Location	chr4:149068609-149068610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34043561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34201038	1.00[EUR][1000 genomes]
rs34927488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35591475	1.00[EUR][1000 genomes]
rs35644313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71616579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72726692	1.00[AFR][1000 genomes]
rs7661326	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
2	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
3	chr4:149040600-149083200	Weak transcription	Gastric	stomach
4	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:149041800-149074400	Weak transcription	Lung	lung
7	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:149046400-149076600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr4:149046400-149085800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:149046600-149075600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
12	chr4:149047000-149077200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:149047400-149083800	Weak transcription	Small Intestine	intestine
14	chr4:149049400-149083000	Weak transcription	Fetal Intestine Large	intestine
15	chr4:149049600-149072800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:149055000-149073600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:149055000-149087400	Weak transcription	Psoas Muscle	Psoas
18	chr4:149062600-149075600	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:149063000-149076400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:149063000-149087400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:149063200-149077000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr4:149063200-149085600	Weak transcription	Fetal Intestine Small	intestine
23	chr4:149063400-149072200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:149064200-149076200	Weak transcription	Brain Angular Gyrus	brain
25	chr4:149066000-149069200	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr4:149066000-149069600	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr4:149067000-149068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr4:149067200-149071200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:149067400-149069800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:149067600-149074000	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:149067600-149087400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:149067800-149068800	Weak transcription	Pancreas	Pancrea
33	chr4:149067800-149073600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:149067800-149074200	Weak transcription	Ovary	ovary
35	chr4:149067800-149074600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr4:149067800-149075000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr4:149068000-149068800	Weak transcription	Adipose Nuclei	Adipose
38	chr4:149068000-149072600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:149068000-149072600	Weak transcription	Liver	Liver
40	chr4:149068000-149073600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr4:149068000-149074400	Weak transcription	Fetal Stomach	stomach
42	chr4:149068000-149083200	Weak transcription	Left Ventricle	heart
43	chr4:149068000-149085800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:149068000-149085800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr4:149068000-149097400	Weak transcription	Spleen	Spleen
46	chr4:149068200-149087400	Weak transcription	Esophagus	oesophagus
47	chr4:149068600-149069000	Enhancers	Right Ventricle	heart

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