Variant report

Variant	rs35644313
Chromosome Location	chr4:149085585-149085586
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34043561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34201038	0.95[EUR][1000 genomes]
rs34927488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34936098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35591475	0.95[EUR][1000 genomes]
rs71616579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72726692	1.00[AFR][1000 genomes]
rs7661326	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
2	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:149046400-149085800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
6	chr4:149055000-149087400	Weak transcription	Psoas Muscle	Psoas
7	chr4:149063000-149087400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:149063200-149085600	Weak transcription	Fetal Intestine Small	intestine
9	chr4:149067600-149087400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:149068000-149085800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:149068000-149085800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:149068000-149097400	Weak transcription	Spleen	Spleen
13	chr4:149068200-149087400	Weak transcription	Esophagus	oesophagus
14	chr4:149069200-149087400	Weak transcription	Adipose Nuclei	Adipose
15	chr4:149073200-149085800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:149074800-149085800	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:149075800-149085800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr4:149076000-149085800	Weak transcription	Ovary	ovary
19	chr4:149076000-149088200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:149076000-149094600	Weak transcription	Fetal Stomach	stomach
21	chr4:149081800-149086800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:149083000-149085600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:149083000-149086200	Enhancers	Fetal Intestine Large	intestine
24	chr4:149083000-149088600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr4:149083200-149087400	Weak transcription	Right Ventricle	heart
26	chr4:149083400-149086000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:149083400-149086200	Enhancers	Fetal Kidney	kidney
28	chr4:149084000-149085800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:149084000-149086000	Weak transcription	Left Ventricle	heart
30	chr4:149084000-149087400	Weak transcription	Right Atrium	heart
31	chr4:149084000-149092200	Weak transcription	Gastric	stomach
32	chr4:149084000-149094400	Weak transcription	Pancreas	Pancrea
33	chr4:149084000-149106200	Weak transcription	Lung	lung
34	chr4:149084400-149086200	Enhancers	Duodenum Mucosa	Duodenum
35	chr4:149084600-149086200	Enhancers	Small Intestine	intestine
36	chr4:149084800-149085800	Weak transcription	HSMMtube	muscle
37	chr4:149084800-149086000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:149084800-149087200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr4:149084800-149087600	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr4:149085200-149088000	Enhancers	Colon Smooth Muscle	Colon
41	chr4:149085200-149092000	Weak transcription	HMEC	breast
42	chr4:149085200-149092400	Weak transcription	Fetal Heart	heart
43	chr4:149085400-149086200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:149085400-149091200	Weak transcription	NHEK	skin
45	chr4:149085400-149092800	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links