Variant report

Variant	rs34930794
Chromosome Location	chr15:93055853-93055854
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11425708	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11918080	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12695321	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13100914	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13318106	0.94[EUR][1000 genomes]
rs1344131	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17630430	0.80[ASN][1000 genomes]
rs17697994	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920379	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2091669	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2222827	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2864066	0.92[ASN][1000 genomes]
rs2864067	0.92[ASN][1000 genomes]
rs28735793	0.82[ASN][1000 genomes]
rs33956431	0.88[ASN][1000 genomes]
rs34523792	0.80[ASN][1000 genomes]
rs34844901	0.88[ASN][1000 genomes]
rs35242629	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35619123	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35780065	0.88[ASN][1000 genomes]
rs35914238	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4263291	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831227	0.88[ASN][1000 genomes]
rs4831228	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4831229	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4831230	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5004406	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56121547	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269168	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269170	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66490447	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6765355	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6772113	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73139202	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7632265	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637650	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289042	0.89[ASN][1000 genomes]
rs9813038	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9816425	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9821865	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9822568	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9827733	0.94[EUR][1000 genomes]
rs9836963	0.88[ASN][1000 genomes]
rs9837276	0.88[ASN][1000 genomes]
rs9839078	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9851643	0.80[ASN][1000 genomes]
rs9854345	0.88[ASN][1000 genomes]
rs9854711	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9855097	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857520	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866484	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866658	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9868784	0.93[EUR][1000 genomes]
rs9873576	0.94[ASN][1000 genomes]
rs9877662	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9985471	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv2751542	chr15:93053681-93091815	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93054600-93056800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr15:93054800-93061600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:93055800-93063800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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