Variant report

Variant	rs12695321
Chromosome Location	chr3:115848515-115848516
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10212350	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs11425708	0.83[AMR][1000 genomes]
rs13318106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1344131	0.93[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17697994	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs1920379	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2222827	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs34930794	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35914238	0.94[EUR][1000 genomes]
rs4263291	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4831229	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs4831230	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5004406	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56121547	0.94[EUR][1000 genomes]
rs62269168	0.86[EUR][1000 genomes]
rs62269170	0.94[EUR][1000 genomes]
rs6438298	0.90[YRI][hapmap]
rs66490447	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73139202	0.93[EUR][1000 genomes]
rs7632265	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs9283565	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs9289044	0.80[AFR][1000 genomes]
rs9809229	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9813038	0.83[EUR][1000 genomes]
rs9821865	0.83[AMR][1000 genomes]
rs9827733	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837276	0.84[CEU][hapmap]
rs9857520	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs9866484	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9866658	0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9868784	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873576	0.81[CEU][hapmap]
rs9877662	0.93[EUR][1000 genomes]
rs9985471	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115846000-115851200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:115847400-115849400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr3:115848000-115848600	Enhancers	Liver	Liver
4	chr3:115848400-115848800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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