Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:115838925..115841642-chr3:115843217..115845978,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12695321	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318106	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1344131	0.94[EUR][1000 genomes]
rs17697994	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1920379	0.92[EUR][1000 genomes]
rs2222827	0.92[EUR][1000 genomes]
rs34930794	0.93[EUR][1000 genomes]
rs35914238	0.92[EUR][1000 genomes]
rs4831229	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4831230	0.94[EUR][1000 genomes]
rs5004406	0.92[EUR][1000 genomes]
rs56121547	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62269168	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62269170	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66490447	0.92[EUR][1000 genomes]
rs73139202	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7632265	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9809229	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9813038	0.83[EUR][1000 genomes]
rs9827733	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857520	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9866484	0.92[EUR][1000 genomes]
rs9866658	1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9877662	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9985471	0.88[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115837600-115847400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:115842200-115846000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:115843200-115844800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:115843600-115848400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:115844200-115845000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:115844400-115845000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:115844600-115845600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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