Variant report

Variant	rs34942579
Chromosome Location	chr6:77462124-77462125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs13195087	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13197683	0.80[EUR][1000 genomes]
rs1545653	0.82[ASN][1000 genomes]
rs1585217	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1598868	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1841002	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1903692	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1903693	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2004871	0.82[ASN][1000 genomes]
rs2872886	0.83[ASN][1000 genomes]
rs2872887	0.83[ASN][1000 genomes]
rs34317226	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34419579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35744814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36068749	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4063137	0.82[ASN][1000 genomes]
rs4348275	0.82[ASN][1000 genomes]
rs4364442	0.82[ASN][1000 genomes]
rs4403242	0.83[ASN][1000 genomes]
rs4532416	0.81[ASN][1000 genomes]
rs55734209	0.82[ASN][1000 genomes]
rs56209113	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58286562	0.82[ASN][1000 genomes]
rs58493732	0.82[ASN][1000 genomes]
rs58742734	0.83[ASN][1000 genomes]
rs59016660	0.82[ASN][1000 genomes]
rs60384390	0.82[ASN][1000 genomes]
rs61004700	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918881	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6927000	0.98[EUR][1000 genomes]
rs71561500	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71561501	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71561502	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73759154	0.81[ASN][1000 genomes]
rs73759170	0.82[ASN][1000 genomes]
rs73759172	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73759173	0.87[ASN][1000 genomes]
rs73759174	0.92[ASN][1000 genomes]
rs73759175	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9443270	0.82[ASN][1000 genomes]
rs9443271	0.82[ASN][1000 genomes]
rs9443273	0.82[ASN][1000 genomes]
rs9443274	0.82[ASN][1000 genomes]
rs9443275	0.82[ASN][1000 genomes]
rs9443276	0.82[ASN][1000 genomes]
rs9443277	0.82[ASN][1000 genomes]
rs9443278	0.82[ASN][1000 genomes]
rs9443280	0.82[ASN][1000 genomes]
rs9443281	0.82[ASN][1000 genomes]
rs9443282	0.82[ASN][1000 genomes]
rs9443283	0.82[ASN][1000 genomes]
rs9443285	0.82[ASN][1000 genomes]
rs9443286	0.82[ASN][1000 genomes]
rs9447755	0.82[ASN][1000 genomes]
rs9447757	0.82[ASN][1000 genomes]
rs9447758	0.82[ASN][1000 genomes]
rs9447759	0.82[ASN][1000 genomes]
rs9447760	0.82[ASN][1000 genomes]
rs9447761	0.82[ASN][1000 genomes]
rs9447762	0.82[ASN][1000 genomes]
rs9447763	0.82[ASN][1000 genomes]
rs9447764	0.82[ASN][1000 genomes]
rs9447766	0.82[ASN][1000 genomes]
rs9447768	0.82[ASN][1000 genomes]
rs9447771	0.82[ASN][1000 genomes]
rs9447772	0.82[ASN][1000 genomes]
rs9447775	0.82[ASN][1000 genomes]
rs9447776	0.82[ASN][1000 genomes]
rs9447777	0.82[ASN][1000 genomes]
rs9447778	0.82[ASN][1000 genomes]
rs9447779	0.83[ASN][1000 genomes]
rs9447789	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9447791	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025439	chr6:77093795-77479689	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538320	chr6:77093795-77479689	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1026054	chr6:77294100-77479689	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv886217	chr6:77415155-77490717	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv886218	chr6:77415155-77500526	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv886220	chr6:77415155-77505717	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv886219	chr6:77415155-77515516	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2757180	chr6:77418087-77476663	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2759444	chr6:77418087-77476663	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv5359	chr6:77428304-77469152	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1831962	chr6:77439753-77468320	ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1030490	chr6:77439868-77467919	Weak transcription Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv1017724	chr6:77439868-77468454	ZNF genes & repeats Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv1031654	chr6:77439868-77468626	Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv1023909	chr6:77439868-77469084	Weak transcription ZNF genes & repeats Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1811630	chr6:77440016-77465577	ZNF genes & repeats Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv1029002	chr6:77440818-77468626	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3391366	chr6:77452282-77476828	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3415838	chr6:77452282-77485905	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
22	esv3448552	chr6:77461282-77485905	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77452400-77470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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