Variant report
Variant | rs9447759 |
---|---|
Chromosome Location | chr6:77441620-77441621 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs1545653 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2004870 | 0.92[ASN][1000 genomes] |
rs2004871 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2872886 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2872887 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs34317226 | 0.82[ASN][1000 genomes] |
rs34419579 | 0.82[ASN][1000 genomes] |
rs34942579 | 0.82[ASN][1000 genomes] |
rs35744814 | 0.82[ASN][1000 genomes] |
rs4063137 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4333377 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4348275 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4357097 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs4357098 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4364442 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4403242 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4532416 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs55734209 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs55740487 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs55963439 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs56024282 | 0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs56075918 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs56358955 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs58286562 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs58493732 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs58742734 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs59016660 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs60384390 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs61004700 | 0.82[ASN][1000 genomes] |
rs71561500 | 0.82[ASN][1000 genomes] |
rs73759150 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs73759154 | 0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs73759170 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs73759172 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs73759173 | 0.80[ASN][1000 genomes] |
rs73759174 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs73759175 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs7451723 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs9443270 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443271 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443273 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443274 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443275 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443276 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443277 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443278 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443279 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs9443280 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443281 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443282 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443283 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9443285 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9443286 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9447754 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs9447755 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9447757 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9447758 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9447760 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9447761 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9447762 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9447763 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9447764 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9447766 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9447768 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9447771 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9447772 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9447773 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9447774 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9447775 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9447776 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9447777 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9447778 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9447779 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs9447789 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs9447791 | 0.83[ASN][1000 genomes] |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1025439 | chr6:77093795-77479689 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv538320 | chr6:77093795-77479689 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1029793 | chr6:77259011-77448806 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1026054 | chr6:77294100-77479689 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv1019520 | chr6:77355212-77875164 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
6 | nsv538321 | chr6:77355212-77875164 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
7 | nsv886216 | chr6:77415155-77441715 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv886217 | chr6:77415155-77490717 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
9 | nsv886218 | chr6:77415155-77500526 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
10 | nsv886220 | chr6:77415155-77505717 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
11 | nsv886219 | chr6:77415155-77515516 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
12 | esv2763938 | chr6:77417470-77461073 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
13 | esv2757180 | chr6:77418087-77476663 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
14 | esv2759444 | chr6:77418087-77476663 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
15 | nsv886221 | chr6:77419099-77441715 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
16 | esv1842389 | chr6:77419782-77453089 | Active TSS Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
17 | nsv1034968 | chr6:77425857-77452804 | ZNF genes & repeats Weak transcription Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
18 | nsv5359 | chr6:77428304-77469152 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
19 | nsv1025810 | chr6:77429683-77452804 | ZNF genes & repeats Weak transcription Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
20 | esv1794099 | chr6:77431031-77453089 | Weak transcription Active TSS ZNF genes & repeats Enhancers | n/a | n/a | inside rSNPs | n/a |
21 | esv1795260 | chr6:77431031-77453089 | Weak transcription Enhancers Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
22 | esv1797452 | chr6:77431031-77453089 | ZNF genes & repeats Weak transcription Active TSS Enhancers | n/a | n/a | inside rSNPs | n/a |
23 | esv1797650 | chr6:77431031-77453089 | Enhancers Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | n/a |
24 | esv1801024 | chr6:77431031-77453089 | ZNF genes & repeats Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
25 | esv1001714 | chr6:77435844-77461638 | ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
26 | nsv1030901 | chr6:77436147-77452804 | Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | n/a |
27 | nsv1026686 | chr6:77436147-77461073 | Weak transcription ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | n/a |
28 | esv1792887 | chr6:77436159-77452804 | ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
29 | esv1841677 | chr6:77436159-77452804 | Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
30 | esv2761011 | chr6:77436159-77461073 | Weak transcription ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | n/a |
31 | esv1811749 | chr6:77436181-77453264 | Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
32 | esv1812528 | chr6:77436181-77460911 | Weak transcription ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | n/a |
33 | esv1831089 | chr6:77436360-77452855 | ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
34 | esv1849622 | chr6:77436360-77461581 | Weak transcription Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
35 | nsv1017922 | chr6:77436520-77452804 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | inside rSNPs | n/a |
36 | nsv1028754 | chr6:77436520-77461073 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | inside rSNPs | n/a |
37 | esv1828794 | chr6:77436695-77453264 | Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | n/a |
38 | esv1830477 | chr6:77436695-77461919 | Weak transcription ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | n/a |
39 | nsv511321 | chr6:77436710-77449339 | Weak transcription Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
40 | esv1836495 | chr6:77436710-77453089 | Weak transcription Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
41 | esv1836660 | chr6:77436710-77453089 | ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
42 | esv1839690 | chr6:77436710-77453089 | ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
43 | nsv7926 | chr6:77436849-77460973 | Weak transcription Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
44 | esv2630920 | chr6:77436878-77461596 | Weak transcription ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | n/a |
45 | nsv511900 | chr6:77436965-77460444 | Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | n/a |
46 | esv3474571 | chr6:77438233-77445531 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | inside rSNPs | n/a |
47 | esv3474572 | chr6:77438233-77445531 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | inside rSNPs | n/a |
48 | nsv819255 | chr6:77438254-77461121 | ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
49 | nsv820506 | chr6:77439028-77460962 | Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
50 | esv10050 | chr6:77439258-77460349 | Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:77441000-77452800 | Weak transcription | H1 Cell Line | embryonic stem cell |