Variant report

Variant	rs34958854
Chromosome Location	chr18:45216402-45216403
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10853556	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10853557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11661407	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11662922	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12458400	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12606589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12606616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12954007	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12969708	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34054587	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34282727	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56026317	0.88[EUR][1000 genomes]
rs71355315	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2286	chr18:45181897-45226628	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv576823	chr18:45207893-45264035	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45214800-45217200	Enhancers	Brain Germinal Matrix	brain
2	chr18:45215400-45216600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr18:45215400-45217400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr18:45215600-45216600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr18:45215600-45216600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:45215600-45216800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr18:45215600-45216800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr18:45215600-45217200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr18:45215800-45217200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr18:45215800-45218600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr18:45216000-45216600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr18:45216200-45216800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr18:45216400-45216600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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