Variant report

Variant	rs56026317
Chromosome Location	chr18:45194631-45194632
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10853556	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10853557	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11661407	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11661889	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11662922	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11663070	0.88[EUR][1000 genomes]
rs12458400	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12606589	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12606616	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12953904	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12961333	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12969708	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1510017	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34054587	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34282727	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34958854	0.88[EUR][1000 genomes]
rs3813071	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71355315	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2286	chr18:45181897-45226628	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45193200-45194800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr18:45194200-45194800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr18:45194200-45194800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:45194400-45194800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr18:45194600-45194800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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