Variant report

Variant	rs11661889
Chromosome Location	chr18:45131812-45131813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10853556	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11661407	0.87[EUR][1000 genomes]
rs11662922	0.87[EUR][1000 genomes]
rs11663070	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11663791	0.83[AMR][1000 genomes]
rs12458400	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12953904	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12961333	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12964840	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs1510017	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36079943	0.85[AMR][1000 genomes]
rs3813071	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56026317	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71352687	0.88[EUR][1000 genomes]
rs71355315	0.87[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45130800-45133000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:45131600-45132000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:45131800-45132200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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