Variant report
| Variant | rs12953904 |
|---|---|
| Chromosome Location | chr18:45153621-45153622 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:22)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:22 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| TPMTP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10853556 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11661407 | 0.88[EUR][1000 genomes] |
| rs11661889 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11662922 | 0.88[EUR][1000 genomes] |
| rs11663070 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11663791 | 0.81[AMR][1000 genomes] |
| rs12458400 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12961333 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12964840 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs1510017 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs36079943 | 0.83[AMR][1000 genomes] |
| rs3813071 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56026317 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs71352687 | 0.86[EUR][1000 genomes] |
| rs71355315 | 0.88[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
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