Variant report

Variant	rs10853556
Chromosome Location	chr18:45194191-45194192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10853557	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11661407	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11661889	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11662922	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11663070	0.89[EUR][1000 genomes]
rs12458400	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12606589	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12606616	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12953904	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12961333	0.88[EUR][1000 genomes]
rs12964840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12969708	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1510017	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34054587	0.90[EUR][1000 genomes]
rs34282727	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34958854	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3813071	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56026317	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71355315	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2286	chr18:45181897-45226628	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45193200-45194800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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